miRNA display CGI


Results 1 - 20 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8487 5' -46.8 NC_002169.1 + 61918 0.66 0.999833
Target:  5'- cGGACG---GCAcAGAUCGAGaacaaUGCUGc -3'
miRNA:   3'- aCCUGCuuuCGUuUCUAGCUC-----AUGAU- -5'
8487 5' -46.8 NC_002169.1 + 64769 0.66 0.999783
Target:  5'- uUGGGCGAcuuGGGCAucGGUCGuuuGU-CUGa -3'
miRNA:   3'- -ACCUGCU---UUCGUuuCUAGCu--CAuGAU- -5'
8487 5' -46.8 NC_002169.1 + 57050 0.66 0.999721
Target:  5'- gGGACGugcGCGcAGAUCGAG-AUUGg -3'
miRNA:   3'- aCCUGCuuuCGUuUCUAGCUCaUGAU- -5'
8487 5' -46.8 NC_002169.1 + 35999 0.66 0.999549
Target:  5'- cGGGCGAAugcgaaugcGGCGAuuuuGAagugacUCGAGUGCg- -3'
miRNA:   3'- aCCUGCUU---------UCGUUu---CU------AGCUCAUGau -5'
8487 5' -46.8 NC_002169.1 + 134387 0.67 0.999121
Target:  5'- cUGGGCGGcGGGCuGGGAUUGAGcGCg- -3'
miRNA:   3'- -ACCUGCU-UUCGuUUCUAGCUCaUGau -5'
8487 5' -46.8 NC_002169.1 + 35145 0.68 0.997176
Target:  5'- -cGACGAcuaGGGUGAGGAUCGAGcGCg- -3'
miRNA:   3'- acCUGCU---UUCGUUUCUAGCUCaUGau -5'
8487 5' -46.8 NC_002169.1 + 25796 0.69 0.996636
Target:  5'- -aGGCGAGccGGCAugcGGGAUCGGGUAUUu -3'
miRNA:   3'- acCUGCUU--UCGU---UUCUAGCUCAUGAu -5'
8487 5' -46.8 NC_002169.1 + 10551 0.69 0.995302
Target:  5'- -aGAUGAAAGCAAAcAUUGuGUACUAa -3'
miRNA:   3'- acCUGCUUUCGUUUcUAGCuCAUGAU- -5'
8487 5' -46.8 NC_002169.1 + 84422 0.69 0.994489
Target:  5'- aGGAUGcGAGUucAGGAUCGAauGUACUAc -3'
miRNA:   3'- aCCUGCuUUCGu-UUCUAGCU--CAUGAU- -5'
8487 5' -46.8 NC_002169.1 + 100213 0.69 0.993566
Target:  5'- cGGACGAcAAGCGAgcugaucuGGAUCGAGa---- -3'
miRNA:   3'- aCCUGCU-UUCGUU--------UCUAGCUCaugau -5'
8487 5' -46.8 NC_002169.1 + 37286 0.7 0.990036
Target:  5'- cGGAuCGAcgGAGCAGGGAUCGAugACg- -3'
miRNA:   3'- aCCU-GCU--UUCGUUUCUAGCUcaUGau -5'
8487 5' -46.8 NC_002169.1 + 10677 0.71 0.985142
Target:  5'- -cGAUGAAAGCAAAGAUCGuuGUGg-- -3'
miRNA:   3'- acCUGCUUUCGUUUCUAGCu-CAUgau -5'
8487 5' -46.8 NC_002169.1 + 104989 0.71 0.980981
Target:  5'- -cGAUGAAAGCAAAGAUCauGUGCg- -3'
miRNA:   3'- acCUGCUUUCGUUUCUAGcuCAUGau -5'
8487 5' -46.8 NC_002169.1 + 29549 0.71 0.980981
Target:  5'- gUGGACGAGAaCGAGGA-CGAGUguaaaACUAa -3'
miRNA:   3'- -ACCUGCUUUcGUUUCUaGCUCA-----UGAU- -5'
8487 5' -46.8 NC_002169.1 + 105128 0.73 0.951131
Target:  5'- --uACGAAAGCAAAGAUCauGUACUAg -3'
miRNA:   3'- accUGCUUUCGUUUCUAGcuCAUGAU- -5'
8487 5' -46.8 NC_002169.1 + 11330 0.74 0.936514
Target:  5'- -cGACGAAAGCAAAGAUCG--UGCa- -3'
miRNA:   3'- acCUGCUUUCGUUUCUAGCucAUGau -5'
8487 5' -46.8 NC_002169.1 + 52823 0.74 0.936514
Target:  5'- -cGAUGAAAGCAAAcAUCGuGUACUAa -3'
miRNA:   3'- acCUGCUUUCGUUUcUAGCuCAUGAU- -5'
8487 5' -46.8 NC_002169.1 + 104925 0.74 0.919374
Target:  5'- -cGACGAAAGCAAAGAUCauGUAUUGa -3'
miRNA:   3'- acCUGCUUUCGUUUCUAGcuCAUGAU- -5'
8487 5' -46.8 NC_002169.1 + 119356 0.75 0.8926
Target:  5'- -cGAUaAAAGCAAAGAUCGuGUACUAa -3'
miRNA:   3'- acCUGcUUUCGUUUCUAGCuCAUGAU- -5'
8487 5' -46.8 NC_002169.1 + 42348 0.75 0.885223
Target:  5'- -cGAUGAAAGCAAAGAUCauGUACUAc -3'
miRNA:   3'- acCUGCUUUCGUUUCUAGcuCAUGAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.