miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8488 3' -43.8 NC_002169.1 + 59833 0.66 0.999998
Target:  5'- ---uGU-CGCGAUCgaugUUGCcguUUUCGUCg -3'
miRNA:   3'- uuauCAuGUGCUAGa---AACG---AAAGCAG- -5'
8488 3' -43.8 NC_002169.1 + 29673 0.66 0.999997
Target:  5'- -----aACGCGAUCggUUGCcUUUUGUCu -3'
miRNA:   3'- uuaucaUGUGCUAGa-AACG-AAAGCAG- -5'
8488 3' -43.8 NC_002169.1 + 10326 0.67 0.999991
Target:  5'- ---cGUACAUGAacaaagcaUCUUUGUcaUCGUCa -3'
miRNA:   3'- uuauCAUGUGCU--------AGAAACGaaAGCAG- -5'
8488 3' -43.8 NC_002169.1 + 41109 0.67 0.999982
Target:  5'- cGAUAGUGCG-GAUCggUGCUcUCGa- -3'
miRNA:   3'- -UUAUCAUGUgCUAGaaACGAaAGCag -5'
8488 3' -43.8 NC_002169.1 + 11286 0.67 0.999982
Target:  5'- ----aUACACaAUCUUUGCUUUCaUCg -3'
miRNA:   3'- uuaucAUGUGcUAGAAACGAAAGcAG- -5'
8488 3' -43.8 NC_002169.1 + 11559 0.68 0.999975
Target:  5'- -----aACACcAUCUUUGUUUUUGUCa -3'
miRNA:   3'- uuaucaUGUGcUAGAAACGAAAGCAG- -5'
8488 3' -43.8 NC_002169.1 + 129653 0.69 0.999849
Target:  5'- cGAUGGUgcACACGAUCUcgucGCgUUCGUUc -3'
miRNA:   3'- -UUAUCA--UGUGCUAGAaa--CGaAAGCAG- -5'
8488 3' -43.8 NC_002169.1 + 10520 0.7 0.99967
Target:  5'- -----cACaACGAUCUUUGCUUUCaUCg -3'
miRNA:   3'- uuaucaUG-UGCUAGAAACGAAAGcAG- -5'
8488 3' -43.8 NC_002169.1 + 31417 0.7 0.99967
Target:  5'- ---cGUGCACGAUCUcgucgaUGgUUUUGUCg -3'
miRNA:   3'- uuauCAUGUGCUAGAa-----ACgAAAGCAG- -5'
8488 3' -43.8 NC_002169.1 + 10711 0.71 0.999159
Target:  5'- -uUAGUACACaAUgUUUGCUUucaucuacgaUCGUCg -3'
miRNA:   3'- uuAUCAUGUGcUAgAAACGAA----------AGCAG- -5'
8488 3' -43.8 NC_002169.1 + 104957 0.73 0.995271
Target:  5'- cAUAGU-CA--AUCUUUGCUUUCGUCc -3'
miRNA:   3'- uUAUCAuGUgcUAGAAACGAAAGCAG- -5'
8488 3' -43.8 NC_002169.1 + 105145 0.74 0.986538
Target:  5'- -----cACAUGAUCUUUGCUUUCaUCg -3'
miRNA:   3'- uuaucaUGUGCUAGAAACGAAAGcAG- -5'
8488 3' -43.8 NC_002169.1 + 52900 0.75 0.980251
Target:  5'- -uUAGUACAUcAUCUUUGCUUUCaUCc -3'
miRNA:   3'- uuAUCAUGUGcUAGAAACGAAAGcAG- -5'
8488 3' -43.8 NC_002169.1 + 42378 0.76 0.968763
Target:  5'- -----aACACaAUCUUUGCUUUCGUCc -3'
miRNA:   3'- uuaucaUGUGcUAGAAACGAAAGCAG- -5'
8488 3' -43.8 NC_002169.1 + 42453 0.78 0.91483
Target:  5'- --aAGUcaaACACaAUCUUUGCUUUCGUCc -3'
miRNA:   3'- uuaUCA---UGUGcUAGAAACGAAAGCAG- -5'
8488 3' -43.8 NC_002169.1 + 105412 0.79 0.901211
Target:  5'- ----aUACACGAUCUUUGCUUUCaUCc -3'
miRNA:   3'- uuaucAUGUGCUAGAAACGAAAGcAG- -5'
8488 3' -43.8 NC_002169.1 + 105322 0.79 0.886433
Target:  5'- --aAGUACACaAUgUUUGCUUUCGUCc -3'
miRNA:   3'- uuaUCAUGUGcUAgAAACGAAAGCAG- -5'
8488 3' -43.8 NC_002169.1 + 11636 0.8 0.862184
Target:  5'- -cUAGUACAUGAUgUUUGCUUUCaUCg -3'
miRNA:   3'- uuAUCAUGUGCUAgAAACGAAAGcAG- -5'
8488 3' -43.8 NC_002169.1 + 52976 0.8 0.853574
Target:  5'- -uUAGUACACcAUCUUUGCUUUCaUCg -3'
miRNA:   3'- uuAUCAUGUGcUAGAAACGAAAGcAG- -5'
8488 3' -43.8 NC_002169.1 + 105600 0.8 0.844714
Target:  5'- ----aUACACaAUCUUUGCUUUCGUCg -3'
miRNA:   3'- uuaucAUGUGcUAGAAACGAAAGCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.