miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8488 5' -40.3 NC_002169.1 + 83426 0.69 1
Target:  5'- aUCGAUGAAAGgGA----UGUGUAUUu -3'
miRNA:   3'- -AGCUACUUUCgUUucuaACACAUAAu -5'
8488 5' -40.3 NC_002169.1 + 47518 0.68 1
Target:  5'- aUCaAUGAAAGCGAuc--UGUGUGUUAu -3'
miRNA:   3'- -AGcUACUUUCGUUucuaACACAUAAU- -5'
8488 5' -40.3 NC_002169.1 + 105481 0.68 1
Target:  5'- -gGAcGAAAGCAAAcAUUGUGUAc-- -3'
miRNA:   3'- agCUaCUUUCGUUUcUAACACAUaau -5'
8488 5' -40.3 NC_002169.1 + 11664 0.67 1
Target:  5'- aUCGAUGAcuGCAucGAUaGUGUc--- -3'
miRNA:   3'- -AGCUACUuuCGUuuCUAaCACAuaau -5'
8488 5' -40.3 NC_002169.1 + 98692 0.67 1
Target:  5'- gUCGAUccGAAGCGGGGucucAUUGUGUAUUu -3'
miRNA:   3'- -AGCUAc-UUUCGUUUC----UAACACAUAAu -5'
8488 5' -40.3 NC_002169.1 + 10978 0.66 1
Target:  5'- cUCGAcGAAAGCAAAcAUcGUGUAc-- -3'
miRNA:   3'- -AGCUaCUUUCGUUUcUAaCACAUaau -5'
8488 5' -40.3 NC_002169.1 + 11474 0.66 1
Target:  5'- gUCGAUGAAAGCAAAcaucaUGUAc-- -3'
miRNA:   3'- -AGCUACUUUCGUUUcuaacACAUaau -5'
8488 5' -40.3 NC_002169.1 + 104799 0.66 1
Target:  5'- -gGAcGAAAGCAAAGAUUGacUAUg- -3'
miRNA:   3'- agCUaCUUUCGUUUCUAACacAUAau -5'
8488 5' -40.3 NC_002169.1 + 64392 0.67 1
Target:  5'- aCGAauUGaAAAGCAAAGGUUGcGUGc-- -3'
miRNA:   3'- aGCU--AC-UUUCGUUUCUAACaCAUaau -5'
8488 5' -40.3 NC_002169.1 + 53076 0.69 1
Target:  5'- -gGAcGAAAGCAAAGAUcaUGUAUUGa -3'
miRNA:   3'- agCUaCUUUCGUUUCUAacACAUAAU- -5'
8488 5' -40.3 NC_002169.1 + 11204 0.7 0.999999
Target:  5'- -gGAcGAAAGCAAAGAUcaUGUAUUAa -3'
miRNA:   3'- agCUaCUUUCGUUUCUAacACAUAAU- -5'
8488 5' -40.3 NC_002169.1 + 53284 0.7 0.999999
Target:  5'- gUCGAcGAAAGCAAAGAUcaUGUAc-- -3'
miRNA:   3'- -AGCUaCUUUCGUUUCUAacACAUaau -5'
8488 5' -40.3 NC_002169.1 + 11068 0.7 0.999999
Target:  5'- uUCGAcGAAAGCAAAGAUcaUGUAc-- -3'
miRNA:   3'- -AGCUaCUUUCGUUUCUAacACAUaau -5'
8488 5' -40.3 NC_002169.1 + 10741 0.7 0.999999
Target:  5'- uUCGAcGAAAGCAAAGAUcaUGUAc-- -3'
miRNA:   3'- -AGCUaCUUUCGUUUCUAacACAUaau -5'
8488 5' -40.3 NC_002169.1 + 129761 0.71 0.999995
Target:  5'- gUUGGUGAcGAGCGGAuggacgcGAUUGUGUAUg- -3'
miRNA:   3'- -AGCUACU-UUCGUUU-------CUAACACAUAau -5'
8488 5' -40.3 NC_002169.1 + 48879 0.72 0.99999
Target:  5'- -aGAUGAGGGa--GGAUUGUGUGUc- -3'
miRNA:   3'- agCUACUUUCguuUCUAACACAUAau -5'
8488 5' -40.3 NC_002169.1 + 11096 0.73 0.999928
Target:  5'- -gGAcGAAAGCAAAGAUcGUGUAc-- -3'
miRNA:   3'- agCUaCUUUCGUUUCUAaCACAUaau -5'
8488 5' -40.3 NC_002169.1 + 11602 0.73 0.999928
Target:  5'- -gGAcGAAAGCAAAGAUcGUGUAc-- -3'
miRNA:   3'- agCUaCUUUCGUUUCUAaCACAUaau -5'
8488 5' -40.3 NC_002169.1 + 42032 0.73 0.999928
Target:  5'- -gGAcGAAAGCAAAGAUcGUGUAc-- -3'
miRNA:   3'- agCUaCUUUCGUUUCUAaCACAUaau -5'
8488 5' -40.3 NC_002169.1 + 119635 0.73 0.999928
Target:  5'- -gGAcGAAAGCAAAGAUcGUGUAc-- -3'
miRNA:   3'- agCUaCUUUCGUUUCUAaCACAUaau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.