miRNA display CGI


Results 1 - 20 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8506 5' -44.5 NC_002169.1 + 80180 0.67 0.999966
Target:  5'- gUCGAUGAcguuguuuauuaAAGCGuuGAUCaUGUGCa- -3'
miRNA:   3'- -AGCUACU------------UUCGUuuCUAGcACAUGac -5'
8506 5' -44.5 NC_002169.1 + 64392 0.69 0.999687
Target:  5'- aCGAauUGaAAAGCAAAGGUUGcGUGCUc -3'
miRNA:   3'- aGCU--AC-UUUCGUUUCUAGCaCAUGAc -5'
8506 5' -44.5 NC_002169.1 + 105481 0.7 0.999495
Target:  5'- -gGAcGAAAGCAAAcAUUGUGUACUu -3'
miRNA:   3'- agCUaCUUUCGUUUcUAGCACAUGAc -5'
8506 5' -44.5 NC_002169.1 + 119482 0.7 0.999495
Target:  5'- -gGAcGAAAGCAAAGAUCGUcUAUg- -3'
miRNA:   3'- agCUaCUUUCGUUUCUAGCAcAUGac -5'
8506 5' -44.5 NC_002169.1 + 129825 0.71 0.998205
Target:  5'- uUCGAcUGAAcgaacGCGacGAGAUCGUGUGCa- -3'
miRNA:   3'- -AGCU-ACUUu----CGU--UUCUAGCACAUGac -5'
8506 5' -44.5 NC_002169.1 + 11204 0.72 0.996881
Target:  5'- -gGAcGAAAGCAAAGAUCaUGUAUUa -3'
miRNA:   3'- agCUaCUUUCGUUUCUAGcACAUGAc -5'
8506 5' -44.5 NC_002169.1 + 41928 0.72 0.996881
Target:  5'- -gGAcGAAAGCAAAGAUCGaGUAUg- -3'
miRNA:   3'- agCUaCUUUCGUUUCUAGCaCAUGac -5'
8506 5' -44.5 NC_002169.1 + 10880 0.73 0.992949
Target:  5'- gUCGAaGAucuuggacgAAGCAAAGAUCGaGUACUa -3'
miRNA:   3'- -AGCUaCU---------UUCGUUUCUAGCaCAUGAc -5'
8506 5' -44.5 NC_002169.1 + 42291 0.73 0.989129
Target:  5'- -gGAcGAAAGCAAAGAUUGUGUuugACUu -3'
miRNA:   3'- agCUaCUUUCGUUUCUAGCACA---UGAc -5'
8506 5' -44.5 NC_002169.1 + 42222 0.73 0.989129
Target:  5'- -gGAcGAAAGCAAAGAUUGUGU-UUGg -3'
miRNA:   3'- agCUaCUUUCGUUUCUAGCACAuGAC- -5'
8506 5' -44.5 NC_002169.1 + 104869 0.75 0.979399
Target:  5'- -gGAcGAAAGCAAAGAUCGaGUagGCUGa -3'
miRNA:   3'- agCUaCUUUCGUUUCUAGCaCA--UGAC- -5'
8506 5' -44.5 NC_002169.1 + 105130 0.75 0.979399
Target:  5'- ----cGAAAGCAAAGAUCaUGUACUa -3'
miRNA:   3'- agcuaCUUUCGUUUCUAGcACAUGAc -5'
8506 5' -44.5 NC_002169.1 + 53076 0.77 0.947709
Target:  5'- -gGAcGAAAGCAAAGAUCaUGUAUUGa -3'
miRNA:   3'- agCUaCUUUCGUUUCUAGcACAUGAC- -5'
8506 5' -44.5 NC_002169.1 + 52698 0.77 0.942865
Target:  5'- -gGAcGAAAGCAAAGAUCaUGUACUa -3'
miRNA:   3'- agCUaCUUUCGUUUCUAGcACAUGAc -5'
8506 5' -44.5 NC_002169.1 + 71670 0.77 0.942865
Target:  5'- -gGAcGAAAGCAAAGAUCaUGUACUa -3'
miRNA:   3'- agCUaCUUUCGUUUCUAGcACAUGAc -5'
8506 5' -44.5 NC_002169.1 + 11196 0.78 0.907812
Target:  5'- -gGAcGAAAGCAAAGAUCGaGUACUa -3'
miRNA:   3'- agCUaCUUUCGUUUCUAGCaCAUGAc -5'
8506 5' -44.5 NC_002169.1 + 105376 0.79 0.88646
Target:  5'- gUCGAcGAucuuggacaaAAGCAAAGAUCGUGUAUUa -3'
miRNA:   3'- -AGCUaCU----------UUCGUUUCUAGCACAUGAc -5'
8506 5' -44.5 NC_002169.1 + 53060 0.79 0.878796
Target:  5'- -gGAUGAAAGCAAAGAUgaUGUACUa -3'
miRNA:   3'- agCUACUUUCGUUUCUAgcACAUGAc -5'
8506 5' -44.5 NC_002169.1 + 11474 0.8 0.845575
Target:  5'- gUCGAUGAAAGCAAAcAUCaUGUACUa -3'
miRNA:   3'- -AGCUACUUUCGUUUcUAGcACAUGAc -5'
8506 5' -44.5 NC_002169.1 + 10551 0.81 0.798904
Target:  5'- -aGAUGAAAGCAAAcAUUGUGUACUa -3'
miRNA:   3'- agCUACUUUCGUUUcUAGCACAUGAc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.