miRNA display CGI


Results 1 - 20 of 161 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8508 5' -48.1 NC_002169.1 + 58074 0.66 0.999474
Target:  5'- aAAGUucaACGUUaugacCGACGACGcCGuCGACa -3'
miRNA:   3'- -UUCA---UGCAAa----GUUGCUGCuGCuGCUG- -5'
8508 5' -48.1 NC_002169.1 + 17666 0.66 0.999474
Target:  5'- cGAGUugGUgUUCAAUaauaGCGuCGACGAUa -3'
miRNA:   3'- -UUCAugCA-AAGUUGc---UGCuGCUGCUG- -5'
8508 5' -48.1 NC_002169.1 + 6862 0.66 0.999474
Target:  5'- ---gACGccgCAGCcaauGCGACGACGACa -3'
miRNA:   3'- uucaUGCaaaGUUGc---UGCUGCUGCUG- -5'
8508 5' -48.1 NC_002169.1 + 77751 0.66 0.999345
Target:  5'- ---cGCGUcgUCGGCGACG-CG-CGGCa -3'
miRNA:   3'- uucaUGCAa-AGUUGCUGCuGCuGCUG- -5'
8508 5' -48.1 NC_002169.1 + 57137 0.66 0.999345
Target:  5'- ---aGCGg--CcACGGCGGCGGCGAa -3'
miRNA:   3'- uucaUGCaaaGuUGCUGCUGCUGCUg -5'
8508 5' -48.1 NC_002169.1 + 99325 0.66 0.999189
Target:  5'- cGAGUGgGUgccccgCAGCGACGcuaACGAauaCGACa -3'
miRNA:   3'- -UUCAUgCAaa----GUUGCUGC---UGCU---GCUG- -5'
8508 5' -48.1 NC_002169.1 + 135376 0.66 0.999189
Target:  5'- uGGUAUGUUguuuuaUCAuCGACGACGAUa-- -3'
miRNA:   3'- uUCAUGCAA------AGUuGCUGCUGCUGcug -5'
8508 5' -48.1 NC_002169.1 + 111439 0.66 0.999189
Target:  5'- cAGUAUGUUaUAguAUGACaACGACGGCa -3'
miRNA:   3'- uUCAUGCAAaGU--UGCUGcUGCUGCUG- -5'
8508 5' -48.1 NC_002169.1 + 102799 0.66 0.999189
Target:  5'- --uUAC---UCGACGACGACGAagaGGCg -3'
miRNA:   3'- uucAUGcaaAGUUGCUGCUGCUg--CUG- -5'
8508 5' -48.1 NC_002169.1 + 112801 0.66 0.999189
Target:  5'- --uUGCGUaggaGACGccauCGACGACGGCa -3'
miRNA:   3'- uucAUGCAaag-UUGCu---GCUGCUGCUG- -5'
8508 5' -48.1 NC_002169.1 + 81801 0.66 0.999189
Target:  5'- ---gACGUcgacaUCGACGAcacCGACGACGAg -3'
miRNA:   3'- uucaUGCAa----AGUUGCU---GCUGCUGCUg -5'
8508 5' -48.1 NC_002169.1 + 129027 0.66 0.999081
Target:  5'- ----uCGUUcgacaUCAACGACGACGagaggaacgucaacgGCGACg -3'
miRNA:   3'- uucauGCAA-----AGUUGCUGCUGC---------------UGCUG- -5'
8508 5' -48.1 NC_002169.1 + 42811 0.66 0.999003
Target:  5'- -uGUGCGUagUCAAaGGCGGCGccGCGAUc -3'
miRNA:   3'- uuCAUGCAa-AGUUgCUGCUGC--UGCUG- -5'
8508 5' -48.1 NC_002169.1 + 113785 0.66 0.999003
Target:  5'- cGGUAUGcgccaUCcACGuCGACGAUGACa -3'
miRNA:   3'- uUCAUGCaa---AGuUGCuGCUGCUGCUG- -5'
8508 5' -48.1 NC_002169.1 + 30476 0.66 0.999003
Target:  5'- ---aACGUgagCGGCGGCGuCGuCGACa -3'
miRNA:   3'- uucaUGCAaa-GUUGCUGCuGCuGCUG- -5'
8508 5' -48.1 NC_002169.1 + 102129 0.66 0.998874
Target:  5'- ----uCGUUUgGACGACGACGAacgcuuuuuuggaauUGACg -3'
miRNA:   3'- uucauGCAAAgUUGCUGCUGCU---------------GCUG- -5'
8508 5' -48.1 NC_002169.1 + 107323 0.66 0.998781
Target:  5'- -uGUACGa--CAACGGCGGCaucGACGAg -3'
miRNA:   3'- uuCAUGCaaaGUUGCUGCUG---CUGCUg -5'
8508 5' -48.1 NC_002169.1 + 51609 0.66 0.998781
Target:  5'- ---aGCGcucgUUCuuuuGCGGCGACGACGuCa -3'
miRNA:   3'- uucaUGCa---AAGu---UGCUGCUGCUGCuG- -5'
8508 5' -48.1 NC_002169.1 + 120763 0.66 0.998781
Target:  5'- ---cACGgcagCAaaACGACGACGuCGACa -3'
miRNA:   3'- uucaUGCaaa-GU--UGCUGCUGCuGCUG- -5'
8508 5' -48.1 NC_002169.1 + 77830 0.66 0.998781
Target:  5'- ---gGCGUUUUAcCGuCGACGGCGGg -3'
miRNA:   3'- uucaUGCAAAGUuGCuGCUGCUGCUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.