miRNA display CGI


Results 1 - 20 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8509 5' -42.8 NC_002169.1 + 74709 0.66 1
Target:  5'- uGCCAUCGUCGauucuuuaaaaUCGUCGUcGUCGUc-- -3'
miRNA:   3'- -UGGUGGUAGU-----------AGUAGUAaUAGUAaua -5'
8509 5' -42.8 NC_002169.1 + 78908 0.66 1
Target:  5'- gAUCGUCGUCGUCGUCGUcGUCGUc-- -3'
miRNA:   3'- -UGGUGGUAGUAGUAGUAaUAGUAaua -5'
8509 5' -42.8 NC_002169.1 + 83464 0.66 1
Target:  5'- uAUCACCuauugCAUCAUCuUUGUCAa--- -3'
miRNA:   3'- -UGGUGGua---GUAGUAGuAAUAGUaaua -5'
8509 5' -42.8 NC_002169.1 + 102072 0.66 1
Target:  5'- cGCCACCAUacgcaauGUCAUCAaaaugAUCAUg-- -3'
miRNA:   3'- -UGGUGGUAg------UAGUAGUaa---UAGUAaua -5'
8509 5' -42.8 NC_002169.1 + 112893 0.66 1
Target:  5'- uGCUAUUAUCGUCGUaAUUGUCAa--- -3'
miRNA:   3'- -UGGUGGUAGUAGUAgUAAUAGUaaua -5'
8509 5' -42.8 NC_002169.1 + 64082 0.67 0.999999
Target:  5'- uCCACgaCGUCGUCAUCAcgAUUGUUAc -3'
miRNA:   3'- uGGUG--GUAGUAGUAGUaaUAGUAAUa -5'
8509 5' -42.8 NC_002169.1 + 33749 0.67 0.999999
Target:  5'- gGCUAUCAUUAUgGUCAUU-UCGUUGc -3'
miRNA:   3'- -UGGUGGUAGUAgUAGUAAuAGUAAUa -5'
8509 5' -42.8 NC_002169.1 + 18891 0.67 0.999999
Target:  5'- cACCAacaauaacaaaCAUCAUCAUCAUcAUCAa--- -3'
miRNA:   3'- -UGGUg----------GUAGUAGUAGUAaUAGUaaua -5'
8509 5' -42.8 NC_002169.1 + 33271 0.67 0.999999
Target:  5'- gUCGUCGUCGUCGUCGUcGUCAUUu- -3'
miRNA:   3'- uGGUGGUAGUAGUAGUAaUAGUAAua -5'
8509 5' -42.8 NC_002169.1 + 19083 0.67 0.999998
Target:  5'- cACUGCCGUgAUCGUUGUUGgggCGUUGa -3'
miRNA:   3'- -UGGUGGUAgUAGUAGUAAUa--GUAAUa -5'
8509 5' -42.8 NC_002169.1 + 84878 0.67 0.999997
Target:  5'- cAUCAUCAUCAUUAUCcaauUUGUCGUc-- -3'
miRNA:   3'- -UGGUGGUAGUAGUAGu---AAUAGUAaua -5'
8509 5' -42.8 NC_002169.1 + 118659 0.67 0.999996
Target:  5'- aAUCGUCGUCGUCGUCGUcGUCGUa-- -3'
miRNA:   3'- -UGGUGGUAGUAGUAGUAaUAGUAaua -5'
8509 5' -42.8 NC_002169.1 + 123698 0.67 0.999996
Target:  5'- uGCCaauACUGUCGUCGUCGUcGUCGUc-- -3'
miRNA:   3'- -UGG---UGGUAGUAGUAGUAaUAGUAaua -5'
8509 5' -42.8 NC_002169.1 + 104929 0.68 0.999994
Target:  5'- -aCAUCAUCAUCAUCAUU-UUAUa-- -3'
miRNA:   3'- ugGUGGUAGUAGUAGUAAuAGUAaua -5'
8509 5' -42.8 NC_002169.1 + 75692 0.68 0.999988
Target:  5'- uUCAUCAUCGUCAUCGccGUCAc--- -3'
miRNA:   3'- uGGUGGUAGUAGUAGUaaUAGUaaua -5'
8509 5' -42.8 NC_002169.1 + 75684 0.68 0.999988
Target:  5'- uAUCGUCGUCGUCGUCGUcgucuccaccguUGUCAUUGUu -3'
miRNA:   3'- -UGGUGGUAGUAGUAGUA------------AUAGUAAUA- -5'
8509 5' -42.8 NC_002169.1 + 55490 0.68 0.999984
Target:  5'- cGCCGCCGcUGUCGUCGUcGUCAc--- -3'
miRNA:   3'- -UGGUGGUaGUAGUAGUAaUAGUaaua -5'
8509 5' -42.8 NC_002169.1 + 135168 0.68 0.999984
Target:  5'- aACCAUCGUCGuuguUCGUCGUcGUCAg--- -3'
miRNA:   3'- -UGGUGGUAGU----AGUAGUAaUAGUaaua -5'
8509 5' -42.8 NC_002169.1 + 33334 0.68 0.999984
Target:  5'- gUUAUCGUCGUCGUCGUcGUCGUa-- -3'
miRNA:   3'- uGGUGGUAGUAGUAGUAaUAGUAaua -5'
8509 5' -42.8 NC_002169.1 + 111468 0.69 0.999977
Target:  5'- uACgACU-UUGUCGUCAUUAUCGUUGUu -3'
miRNA:   3'- -UGgUGGuAGUAGUAGUAAUAGUAAUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.