miRNA display CGI


Results 1 - 20 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8512 3' -44.1 NC_002169.1 + 36102 0.66 0.999995
Target:  5'- --gCGCACAcuGUCUUUGCag-UAUCg -3'
miRNA:   3'- aaaGCGUGUacUAGAAACGaaaGUAG- -5'
8512 3' -44.1 NC_002169.1 + 105207 0.67 0.999962
Target:  5'- ----aUACAcGAUCUUUGCUUUUGUCc -3'
miRNA:   3'- aaagcGUGUaCUAGAAACGAAAGUAG- -5'
8512 3' -44.1 NC_002169.1 + 42451 0.67 0.999949
Target:  5'- -gUCaaaCACA--AUCUUUGCUUUCGUCc -3'
miRNA:   3'- aaAGc--GUGUacUAGAAACGAAAGUAG- -5'
8512 3' -44.1 NC_002169.1 + 104964 0.68 0.999875
Target:  5'- -aUCGUuuCAUagucaAUCUUUGCUUUCGUCc -3'
miRNA:   3'- aaAGCGu-GUAc----UAGAAACGAAAGUAG- -5'
8512 3' -44.1 NC_002169.1 + 80007 0.68 0.999836
Target:  5'- --gUGCACAUGAUCaacGCUUuaauaaacaacgUCAUCg -3'
miRNA:   3'- aaaGCGUGUACUAGaaaCGAA------------AGUAG- -5'
8512 3' -44.1 NC_002169.1 + 105696 0.68 0.999836
Target:  5'- -aUUGUaauACAcGAUCUUUGCUUUC-UCg -3'
miRNA:   3'- aaAGCG---UGUaCUAGAAACGAAAGuAG- -5'
8512 3' -44.1 NC_002169.1 + 42385 0.69 0.999721
Target:  5'- uUUUCcaaaCACA--AUCUUUGCUUUCGUCc -3'
miRNA:   3'- -AAAGc---GUGUacUAGAAACGAAAGUAG- -5'
8512 3' -44.1 NC_002169.1 + 105516 0.69 0.999542
Target:  5'- -gUCgGUACAUcAUgUUUGCUUUCAUCc -3'
miRNA:   3'- aaAG-CGUGUAcUAgAAACGAAAGUAG- -5'
8512 3' -44.1 NC_002169.1 + 12270 0.7 0.999269
Target:  5'- gUUCGCACAUGuUCUguaucGCUUgCAUUa -3'
miRNA:   3'- aAAGCGUGUACuAGAaa---CGAAaGUAG- -5'
8512 3' -44.1 NC_002169.1 + 53096 0.7 0.999087
Target:  5'- uUUUCaUACucaAUCUUUGCUUUCAUCg -3'
miRNA:   3'- -AAAGcGUGuacUAGAAACGAAAGUAG- -5'
8512 3' -44.1 NC_002169.1 + 11288 0.7 0.999087
Target:  5'- ----aCACA--AUCUUUGCUUUCAUCg -3'
miRNA:   3'- aaagcGUGUacUAGAAACGAAAGUAG- -5'
8512 3' -44.1 NC_002169.1 + 101750 0.7 0.998843
Target:  5'- aUUUGCACGucgucauUGAUCggcacGCUUUCGUCc -3'
miRNA:   3'- aAAGCGUGU-------ACUAGaaa--CGAAAGUAG- -5'
8512 3' -44.1 NC_002169.1 + 105605 0.72 0.995698
Target:  5'- uUUUCauaCACA--AUCUUUGCUUUCGUCg -3'
miRNA:   3'- -AAAGc--GUGUacUAGAAACGAAAGUAG- -5'
8512 3' -44.1 NC_002169.1 + 41768 0.72 0.994911
Target:  5'- -cUC-CAUAcucGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- aaAGcGUGUa--CUAGAAACGAAAGUAG- -5'
8512 3' -44.1 NC_002169.1 + 119318 0.73 0.98743
Target:  5'- aUUUUuCAUAgacGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- -AAAGcGUGUa--CUAGAAACGAAAGUAG- -5'
8512 3' -44.1 NC_002169.1 + 10324 0.73 0.98743
Target:  5'- -aUCGUACAUGAacaaagcaUCUUUGUcaUCGUCa -3'
miRNA:   3'- aaAGCGUGUACU--------AGAAACGaaAGUAG- -5'
8512 3' -44.1 NC_002169.1 + 11761 0.73 0.985615
Target:  5'- ----aUACAcGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- aaagcGUGUaCUAGAAACGAAAGUAG- -5'
8512 3' -44.1 NC_002169.1 + 10819 0.74 0.976303
Target:  5'- ---aGUACAcGAUgUUUGCUUUCGUCg -3'
miRNA:   3'- aaagCGUGUaCUAgAAACGAAAGUAG- -5'
8512 3' -44.1 NC_002169.1 + 11038 0.75 0.970261
Target:  5'- ---aGUACucGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- aaagCGUGuaCUAGAAACGAAAGUAG- -5'
8512 3' -44.1 NC_002169.1 + 10711 0.75 0.970261
Target:  5'- ---aGUACucGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- aaagCGUGuaCUAGAAACGAAAGUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.