miRNA display CGI


Results 1 - 20 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8512 5' -45.3 NC_002169.1 + 58318 0.66 0.999987
Target:  5'- cGGACGcgguuauagggaAAGGCAAAGuAUC-UGUcGCUGa -3'
miRNA:   3'- aCCUGC------------UUUCGUUUC-UAGuACA-UGAC- -5'
8512 5' -45.3 NC_002169.1 + 1188 0.66 0.999962
Target:  5'- cGGGCGAGAGCGGAGuuuuacguuuuaAUCuuuccuuuaguucUGUACUa -3'
miRNA:   3'- aCCUGCUUUCGUUUC------------UAGu------------ACAUGAc -5'
8512 5' -45.3 NC_002169.1 + 37286 0.66 0.999954
Target:  5'- cGGAuCGAcgGAGCAGGGAUCgAUG-ACg- -3'
miRNA:   3'- aCCU-GCU--UUCGUUUCUAG-UACaUGac -5'
8512 5' -45.3 NC_002169.1 + 80175 0.67 0.999917
Target:  5'- -uGACGuuguuuauuAAAGCGuuGAUCAUGUGCa- -3'
miRNA:   3'- acCUGC---------UUUCGUuuCUAGUACAUGac -5'
8512 5' -45.3 NC_002169.1 + 84422 0.67 0.999917
Target:  5'- aGGAUGcGAGUucAGGAUCGaaUGUACUa -3'
miRNA:   3'- aCCUGCuUUCGu-UUCUAGU--ACAUGAc -5'
8512 5' -45.3 NC_002169.1 + 118886 0.68 0.999756
Target:  5'- -cGAUGAGAGCcuguAGAUCGgccgugaauuguUGUGCUGa -3'
miRNA:   3'- acCUGCUUUCGuu--UCUAGU------------ACAUGAC- -5'
8512 5' -45.3 NC_002169.1 + 101920 0.68 0.999495
Target:  5'- cGGACGAAAGCGugccGAUCAaugacgacGUGCa- -3'
miRNA:   3'- aCCUGCUUUCGUuu--CUAGUa-------CAUGac -5'
8512 5' -45.3 NC_002169.1 + 52934 0.69 0.999366
Target:  5'- -cGAUGAAAGCAAAGAUUGaGUAUg- -3'
miRNA:   3'- acCUGCUUUCGUUUCUAGUaCAUGac -5'
8512 5' -45.3 NC_002169.1 + 64769 0.69 0.998794
Target:  5'- uUGGGCGAcuuGGGCAucGGUCGuuUGU-CUGa -3'
miRNA:   3'- -ACCUGCU---UUCGUuuCUAGU--ACAuGAC- -5'
8512 5' -45.3 NC_002169.1 + 129820 0.69 0.998524
Target:  5'- cUGaACGAAcGCGacGAGAUCGUGUGCa- -3'
miRNA:   3'- -ACcUGCUUuCGU--UUCUAGUACAUGac -5'
8512 5' -45.3 NC_002169.1 + 10551 0.71 0.993951
Target:  5'- -aGAUGAAAGCAAAcAUUGUGUACUa -3'
miRNA:   3'- acCUGCUUUCGUUUcUAGUACAUGAc -5'
8512 5' -45.3 NC_002169.1 + 74485 0.73 0.98386
Target:  5'- uUGGACGAAuGCAAGcAugugcucugccUCAUGUGCUGc -3'
miRNA:   3'- -ACCUGCUUuCGUUUcU-----------AGUACAUGAC- -5'
8512 5' -45.3 NC_002169.1 + 10677 0.74 0.974082
Target:  5'- -cGAUGAAAGCAAAGAUC--GUugUGg -3'
miRNA:   3'- acCUGCUUUCGUUUCUAGuaCAugAC- -5'
8512 5' -45.3 NC_002169.1 + 105353 0.75 0.956563
Target:  5'- uUGGAUGAAAGCAAAcAUgAUGUACc- -3'
miRNA:   3'- -ACCUGCUUUCGUUUcUAgUACAUGac -5'
8512 5' -45.3 NC_002169.1 + 10971 0.75 0.942865
Target:  5'- -cGACGAAA-CAAAGAUCAUGUAUUa -3'
miRNA:   3'- acCUGCUUUcGUUUCUAGUACAUGAc -5'
8512 5' -45.3 NC_002169.1 + 104797 0.78 0.878796
Target:  5'- uUGGACGAAAGCAAAGAUUg---ACUa -3'
miRNA:   3'- -ACCUGCUUUCGUUUCUAGuacaUGAc -5'
8512 5' -45.3 NC_002169.1 + 52823 0.78 0.878796
Target:  5'- -cGAUGAAAGCAAAcAUCGUGUACUa -3'
miRNA:   3'- acCUGCUUUCGUUUcUAGUACAUGAc -5'
8512 5' -45.3 NC_002169.1 + 11476 0.79 0.845575
Target:  5'- -cGAUGAAAGCAAAcAUCAUGUACUa -3'
miRNA:   3'- acCUGCUUUCGUUUcUAGUACAUGAc -5'
8512 5' -45.3 NC_002169.1 + 41902 0.79 0.836667
Target:  5'- uUGGACGAAAGCAAA-AUCGaGUACUa -3'
miRNA:   3'- -ACCUGCUUUCGUUUcUAGUaCAUGAc -5'
8512 5' -45.3 NC_002169.1 + 119356 0.79 0.818191
Target:  5'- -cGAUaAAAGCAAAGAUCGUGUACUa -3'
miRNA:   3'- acCUGcUUUCGUUUCUAGUACAUGAc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.