miRNA display CGI


Results 1 - 20 of 64 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8513 5' -43.5 NC_002169.1 + 84421 0.67 0.999994
Target:  5'- gGAUGcGAGUucAGGAUCGaaUGUACUAc -3'
miRNA:   3'- gCUACuUUCGu-UUCUAGC--ACAUGAUu -5'
8513 5' -43.5 NC_002169.1 + 41904 0.68 0.999988
Target:  5'- gGAcGAAAGCAAA-AUCGaGUACUAAa -3'
miRNA:   3'- gCUaCUUUCGUUUcUAGCaCAUGAUU- -5'
8513 5' -43.5 NC_002169.1 + 129815 0.68 0.999976
Target:  5'- ---cGAAcGCGacGAGAUCGUGUGCa-- -3'
miRNA:   3'- gcuaCUUuCGU--UUCUAGCACAUGauu -5'
8513 5' -43.5 NC_002169.1 + 64392 0.68 0.999976
Target:  5'- aCGAauUGaAAAGCAAAGGUUGcGUGCUc- -3'
miRNA:   3'- -GCU--AC-UUUCGUUUCUAGCaCAUGAuu -5'
8513 5' -43.5 NC_002169.1 + 105481 0.71 0.999184
Target:  5'- gGAcGAAAGCAAAcAUUGUGUACUu- -3'
miRNA:   3'- gCUaCUUUCGUUUcUAGCACAUGAuu -5'
8513 5' -43.5 NC_002169.1 + 119482 0.71 0.998986
Target:  5'- gGAcGAAAGCAAAGAUCGUcUAUg-- -3'
miRNA:   3'- gCUaCUUUCGUUUCUAGCAcAUGauu -5'
8513 5' -43.5 NC_002169.1 + 42222 0.73 0.996103
Target:  5'- gGAcGAAAGCAAAGAUUGUGUuugGAa -3'
miRNA:   3'- gCUaCUUUCGUUUCUAGCACAugaUU- -5'
8513 5' -43.5 NC_002169.1 + 41928 0.73 0.994558
Target:  5'- gGAcGAAAGCAAAGAUCGaGUAUg-- -3'
miRNA:   3'- gCUaCUUUCGUUUCUAGCaCAUGauu -5'
8513 5' -43.5 NC_002169.1 + 10869 0.74 0.99135
Target:  5'- uGGacGAAGCAAAGAUCGaGUACUAGa -3'
miRNA:   3'- gCUacUUUCGUUUCUAGCaCAUGAUU- -5'
8513 5' -43.5 NC_002169.1 + 42291 0.75 0.984939
Target:  5'- gGAcGAAAGCAAAGAUUGUGUuugACUu- -3'
miRNA:   3'- gCUaCUUUCGUUUCUAGCACA---UGAuu -5'
8513 5' -43.5 NC_002169.1 + 104869 0.76 0.978131
Target:  5'- gGAcGAAAGCAAAGAUCGaGUagGCUGAu -3'
miRNA:   3'- gCUaCUUUCGUUUCUAGCaCA--UGAUU- -5'
8513 5' -43.5 NC_002169.1 + 118887 0.76 0.972475
Target:  5'- uCGAUGAGAGCcuguAGAUCGgccgugaauuguUGUGCUGAc -3'
miRNA:   3'- -GCUACUUUCGuu--UCUAGC------------ACAUGAUU- -5'
8513 5' -43.5 NC_002169.1 + 11331 0.77 0.965831
Target:  5'- uCGAcGAAAGCAAAGAUCGUGcauuuCUGc -3'
miRNA:   3'- -GCUaCUUUCGUUUCUAGCACau---GAUu -5'
8513 5' -43.5 NC_002169.1 + 11204 0.78 0.939362
Target:  5'- gGAcGAAAGCAAAGAUCaUGUAUUAAa -3'
miRNA:   3'- gCUaCUUUCGUUUCUAGcACAUGAUU- -5'
8513 5' -43.5 NC_002169.1 + 53076 0.78 0.93394
Target:  5'- gGAcGAAAGCAAAGAUCaUGUAUUGAa -3'
miRNA:   3'- gCUaCUUUCGUUUCUAGcACAUGAUU- -5'
8513 5' -43.5 NC_002169.1 + 104926 0.8 0.879949
Target:  5'- uCGAcGAAAGCAAAGAUCaUGUAUUGAa -3'
miRNA:   3'- -GCUaCUUUCGUUUCUAGcACAUGAUU- -5'
8513 5' -43.5 NC_002169.1 + 11475 0.8 0.879949
Target:  5'- uCGAUGAAAGCAAAcAUCaUGUACUAGa -3'
miRNA:   3'- -GCUACUUUCGUUUcUAGcACAUGAUU- -5'
8513 5' -43.5 NC_002169.1 + 52933 0.8 0.871915
Target:  5'- uCGAUGAAAGCAAAGAUUGaGUAUg-- -3'
miRNA:   3'- -GCUACUUUCGUUUCUAGCaCAUGauu -5'
8513 5' -43.5 NC_002169.1 + 105130 0.8 0.871915
Target:  5'- ---cGAAAGCAAAGAUCaUGUACUAGa -3'
miRNA:   3'- gcuaCUUUCGUUUCUAGcACAUGAUU- -5'
8513 5' -43.5 NC_002169.1 + 105442 0.82 0.798763
Target:  5'- uCGAcGAAAGCAAAGAUUGUGUAUg-- -3'
miRNA:   3'- -GCUaCUUUCGUUUCUAGCACAUGauu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.