miRNA display CGI


Results 1 - 20 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8525 3' -42.3 NC_002169.1 + 10711 0.67 1
Target:  5'- -uUAGUACACaAUgUUUGCUUucaucuacgaUCGUCg -3'
miRNA:   3'- acAUUAUGUGcUAgAAACGAA----------AGCAG- -5'
8525 3' -42.3 NC_002169.1 + 131519 0.66 1
Target:  5'- aGUAuUugACGAucgauUCUUUGUg-UCGUCg -3'
miRNA:   3'- aCAUuAugUGCU-----AGAAACGaaAGCAG- -5'
8525 3' -42.3 NC_002169.1 + 25788 0.66 1
Target:  5'- cGgcAUGCGgGAUCgg-GUaUUUCGUCg -3'
miRNA:   3'- aCauUAUGUgCUAGaaaCG-AAAGCAG- -5'
8525 3' -42.3 NC_002169.1 + 127252 0.66 1
Target:  5'- ------cCACGAUCgcuucgUGCUcgUCGUCa -3'
miRNA:   3'- acauuauGUGCUAGaa----ACGAa-AGCAG- -5'
8525 3' -42.3 NC_002169.1 + 110097 0.68 0.999999
Target:  5'- uUGUAAUACuuGAUCUUggGCaccUCGUUu -3'
miRNA:   3'- -ACAUUAUGugCUAGAAa-CGaa-AGCAG- -5'
8525 3' -42.3 NC_002169.1 + 27548 0.68 0.999999
Target:  5'- ----uUGCACGAUUg--GCgcgUCGUCa -3'
miRNA:   3'- acauuAUGUGCUAGaaaCGaa-AGCAG- -5'
8525 3' -42.3 NC_002169.1 + 125655 0.68 0.999999
Target:  5'- gUGUAGUugGCGGgcg-UGUUggCGUCa -3'
miRNA:   3'- -ACAUUAugUGCUagaaACGAaaGCAG- -5'
8525 3' -42.3 NC_002169.1 + 29673 0.69 0.999997
Target:  5'- -----aACGCGAUCggUUGCcUUUUGUCu -3'
miRNA:   3'- acauuaUGUGCUAGa-AACG-AAAGCAG- -5'
8525 3' -42.3 NC_002169.1 + 59827 0.69 0.999995
Target:  5'- cGUucAUGuCGCGAUCgaugUUGCcguUUUCGUCg -3'
miRNA:   3'- aCAu-UAU-GUGCUAGa---AACG---AAAGCAG- -5'
8525 3' -42.3 NC_002169.1 + 45715 0.69 0.999993
Target:  5'- aGUAucUGCGCGA-CUUggccgGCUaUCGUCg -3'
miRNA:   3'- aCAUu-AUGUGCUaGAAa----CGAaAGCAG- -5'
8525 3' -42.3 NC_002169.1 + 41053 0.7 0.999981
Target:  5'- cGUAAUcgaAUACGGUCUUUGg---CGUCg -3'
miRNA:   3'- aCAUUA---UGUGCUAGAAACgaaaGCAG- -5'
8525 3' -42.3 NC_002169.1 + 11559 0.7 0.999973
Target:  5'- -----aACACcAUCUUUGUUUUUGUCa -3'
miRNA:   3'- acauuaUGUGcUAGAAACGAAAGCAG- -5'
8525 3' -42.3 NC_002169.1 + 104968 0.71 0.999905
Target:  5'- aUGUAucguuucAUAguCaAUCUUUGCUUUCGUCc -3'
miRNA:   3'- -ACAU-------UAUguGcUAGAAACGAAAGCAG- -5'
8525 3' -42.3 NC_002169.1 + 52900 0.72 0.999726
Target:  5'- -uUAGUACAUcAUCUUUGCUUUCaUCc -3'
miRNA:   3'- acAUUAUGUGcUAGAAACGAAAGcAG- -5'
8525 3' -42.3 NC_002169.1 + 10520 0.72 0.999648
Target:  5'- -----cACaACGAUCUUUGCUUUCaUCg -3'
miRNA:   3'- acauuaUG-UGCUAGAAACGAAAGcAG- -5'
8525 3' -42.3 NC_002169.1 + 31414 0.73 0.998892
Target:  5'- cGgcGUGCACGAUCUcgucgaUGgUUUUGUCg -3'
miRNA:   3'- aCauUAUGUGCUAGAa-----ACgAAAGCAG- -5'
8525 3' -42.3 NC_002169.1 + 105322 0.77 0.987757
Target:  5'- --aAGUACACaAUgUUUGCUUUCGUCc -3'
miRNA:   3'- acaUUAUGUGcUAgAAACGAAAGCAG- -5'
8525 3' -42.3 NC_002169.1 + 105145 0.77 0.98599
Target:  5'- -----cACAUGAUCUUUGCUUUCaUCg -3'
miRNA:   3'- acauuaUGUGCUAGAAACGAAAGcAG- -5'
8525 3' -42.3 NC_002169.1 + 11636 0.77 0.984034
Target:  5'- -cUAGUACAUGAUgUUUGCUUUCaUCg -3'
miRNA:   3'- acAUUAUGUGCUAgAAACGAAAGcAG- -5'
8525 3' -42.3 NC_002169.1 + 11283 0.77 0.981877
Target:  5'- -uUAAUACACaAUCUUUGCUUUCaUCg -3'
miRNA:   3'- acAUUAUGUGcUAGAAACGAAAGcAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.