miRNA display CGI


Results 1 - 20 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8530 5' -60.2 NC_002169.1 + 75704 0.66 0.728697
Target:  5'- --aUCGCCGUCaCCaUCGaCGUCGUCu -3'
miRNA:   3'- aacAGCGGCAGcGGcGGCaGCAGCAG- -5'
8530 5' -60.2 NC_002169.1 + 62065 0.66 0.728697
Target:  5'- -aGUCGaCGaaaagaCGCCGCCGUCGauUCGgUCa -3'
miRNA:   3'- aaCAGCgGCa-----GCGGCGGCAGC--AGC-AG- -5'
8530 5' -60.2 NC_002169.1 + 122159 0.66 0.699507
Target:  5'- -cGUCGUCGUugaCGCUauuGCCGUCGcCGcCa -3'
miRNA:   3'- aaCAGCGGCA---GCGG---CGGCAGCaGCaG- -5'
8530 5' -60.2 NC_002169.1 + 77908 0.66 0.699507
Target:  5'- gUGcCGCgCGUCGCCGaCGaCG-CGUCg -3'
miRNA:   3'- aACaGCG-GCAGCGGCgGCaGCaGCAG- -5'
8530 5' -60.2 NC_002169.1 + 49431 0.66 0.699507
Target:  5'- aUUGUaaaCGgCGUCGCCGUCGUUGaUGUUu -3'
miRNA:   3'- -AACA---GCgGCAGCGGCGGCAGCaGCAG- -5'
8530 5' -60.2 NC_002169.1 + 84697 0.66 0.695573
Target:  5'- aUGUCGCCaaacccucuacuuUCGCCGCCcG-CGUCGa- -3'
miRNA:   3'- aACAGCGGc------------AGCGGCGG-CaGCAGCag -5'
8530 5' -60.2 NC_002169.1 + 125579 0.66 0.689658
Target:  5'- --uUCGCgCGUCGCCGCCacUCgGUCGa- -3'
miRNA:   3'- aacAGCG-GCAGCGGCGGc-AG-CAGCag -5'
8530 5' -60.2 NC_002169.1 + 59663 0.66 0.689658
Target:  5'- -aGUCGCCGUCGaaGCCaUCcUCGa- -3'
miRNA:   3'- aaCAGCGGCAGCggCGGcAGcAGCag -5'
8530 5' -60.2 NC_002169.1 + 112781 0.66 0.689658
Target:  5'- aUGUCGgCGUCGUCGuaGUCGguUCGa- -3'
miRNA:   3'- aACAGCgGCAGCGGCggCAGC--AGCag -5'
8530 5' -60.2 NC_002169.1 + 111877 0.66 0.679763
Target:  5'- gUGUUGuuGUCGCCGaacaCGUCaaUGUCc -3'
miRNA:   3'- aACAGCggCAGCGGCg---GCAGcaGCAG- -5'
8530 5' -60.2 NC_002169.1 + 46184 0.66 0.679763
Target:  5'- --cUCGCC-UCGUCGCCGaUCGcauucaccUCGUCg -3'
miRNA:   3'- aacAGCGGcAGCGGCGGC-AGC--------AGCAG- -5'
8530 5' -60.2 NC_002169.1 + 37406 0.67 0.673807
Target:  5'- -cGUCgGCCGaUCGCUGuacacuccgaacagaCCGUCGUCGa- -3'
miRNA:   3'- aaCAG-CGGC-AGCGGC---------------GGCAGCAGCag -5'
8530 5' -60.2 NC_002169.1 + 127241 0.67 0.659869
Target:  5'- aUGUgGCUGguaaagaUGCCGCUGUUGUCGa- -3'
miRNA:   3'- aACAgCGGCa------GCGGCGGCAGCAGCag -5'
8530 5' -60.2 NC_002169.1 + 4345 0.67 0.658871
Target:  5'- --uUCGCCucCGCCGCCGUCaccaccgcaaccgGUCGUa -3'
miRNA:   3'- aacAGCGGcaGCGGCGGCAG-------------CAGCAg -5'
8530 5' -60.2 NC_002169.1 + 16184 0.67 0.649886
Target:  5'- aUUGUUGuuGUUGuuGuuGUUGUUGUUg -3'
miRNA:   3'- -AACAGCggCAGCggCggCAGCAGCAG- -5'
8530 5' -60.2 NC_002169.1 + 1137 0.67 0.649886
Target:  5'- cUGcCGCCGUCGCCGgUCGUuuagcuugaUGUUGUa -3'
miRNA:   3'- aACaGCGGCAGCGGC-GGCA---------GCAGCAg -5'
8530 5' -60.2 NC_002169.1 + 132678 0.67 0.639889
Target:  5'- ---aCGCaaacaaCGUUGUCGUCGUCGUCGUUc -3'
miRNA:   3'- aacaGCG------GCAGCGGCGGCAGCAGCAG- -5'
8530 5' -60.2 NC_002169.1 + 69343 0.67 0.639889
Target:  5'- -cGUaGCCGUCGCUGgCGUUG-CGUUu -3'
miRNA:   3'- aaCAgCGGCAGCGGCgGCAGCaGCAG- -5'
8530 5' -60.2 NC_002169.1 + 108038 0.67 0.638889
Target:  5'- -cGUCGUC-UCGCCcaccaccaccaccGCCGUCGUC-UCg -3'
miRNA:   3'- aaCAGCGGcAGCGG-------------CGGCAGCAGcAG- -5'
8530 5' -60.2 NC_002169.1 + 135172 0.67 0.629887
Target:  5'- --aUCGUCGUUGU--UCGUCGUCGUCa -3'
miRNA:   3'- aacAGCGGCAGCGgcGGCAGCAGCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.