miRNA display CGI


Results 1 - 20 of 54 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8536 3' -44.4 NC_002169.1 + 116633 0.66 0.999998
Target:  5'- -aUAGUAUuguggugAUGAUGgcUGCUUUUGUUg -3'
miRNA:   3'- agAUCAUG-------UGCUACaaACGAAAGCAG- -5'
8536 3' -44.4 NC_002169.1 + 41873 0.66 0.999998
Target:  5'- ----aUACACGAUcUUUGCUUUCaUCg -3'
miRNA:   3'- agaucAUGUGCUAcAAACGAAAGcAG- -5'
8536 3' -44.4 NC_002169.1 + 41772 0.66 0.999997
Target:  5'- ----aUACuCGAUcUUUGCUUUCGUCc -3'
miRNA:   3'- agaucAUGuGCUAcAAACGAAAGCAG- -5'
8536 3' -44.4 NC_002169.1 + 111087 0.66 0.999993
Target:  5'- -gUAGUACAUGuUGUgcaagUGUUUugUCGUCu -3'
miRNA:   3'- agAUCAUGUGCuACAa----ACGAA--AGCAG- -5'
8536 3' -44.4 NC_002169.1 + 32793 0.68 0.999948
Target:  5'- aCUAGUACGCuGAccgaUUUGCgucgUUUCGUCg -3'
miRNA:   3'- aGAUCAUGUG-CUac--AAACG----AAAGCAG- -5'
8536 3' -44.4 NC_002169.1 + 119325 0.68 0.999948
Target:  5'- ----aUAgACGAUcUUUGCUUUCGUCc -3'
miRNA:   3'- agaucAUgUGCUAcAAACGAAAGCAG- -5'
8536 3' -44.4 NC_002169.1 + 52978 0.68 0.999931
Target:  5'- uUUUAGUACACcAUcUUUGCUUUCaUCg -3'
miRNA:   3'- -AGAUCAUGUGcUAcAAACGAAAGcAG- -5'
8536 3' -44.4 NC_002169.1 + 105514 0.71 0.998397
Target:  5'- --cGGUACAUcAUGUUUGCUUUCaUCc -3'
miRNA:   3'- agaUCAUGUGcUACAAACGAAAGcAG- -5'
8536 3' -44.4 NC_002169.1 + 53233 0.72 0.994466
Target:  5'- ----aUACAUGAUcUUUGCUUUCGUCc -3'
miRNA:   3'- agaucAUGUGCUAcAAACGAAAGCAG- -5'
8536 3' -44.4 NC_002169.1 + 105202 0.74 0.986784
Target:  5'- uUUUAaUACACGAUcUUUGCUUUUGUCc -3'
miRNA:   3'- -AGAUcAUGUGCUAcAAACGAAAGCAG- -5'
8536 3' -44.4 NC_002169.1 + 104769 0.75 0.980696
Target:  5'- ----aUACAUGAUcUUUGCUUUCGUCa -3'
miRNA:   3'- agaucAUGUGCUAcAAACGAAAGCAG- -5'
8536 3' -44.4 NC_002169.1 + 11366 0.75 0.980696
Target:  5'- uUUUAaUACAUGAUcUUUGCUUUCGUCc -3'
miRNA:   3'- -AGAUcAUGUGCUAcAAACGAAAGCAG- -5'
8536 3' -44.4 NC_002169.1 + 41999 0.75 0.978261
Target:  5'- --cAGUACACGAUcUUUGCUUUCaUCu -3'
miRNA:   3'- agaUCAUGUGCUAcAAACGAAAGcAG- -5'
8536 3' -44.4 NC_002169.1 + 42188 0.75 0.978261
Target:  5'- -gUAGUACAUGAUcUUUGCUUUCaUCg -3'
miRNA:   3'- agAUCAUGUGCUAcAAACGAAAGcAG- -5'
8536 3' -44.4 NC_002169.1 + 71637 0.76 0.962607
Target:  5'- --cAGUACACGAUcUUUGCUUUCaUCg -3'
miRNA:   3'- agaUCAUGUGCUAcAAACGAAAGcAG- -5'
8536 3' -44.4 NC_002169.1 + 11568 0.76 0.954565
Target:  5'- cUCUAGUACuCGAUcUUUGCUUUCaUCg -3'
miRNA:   3'- -AGAUCAUGuGCUAcAAACGAAAGcAG- -5'
8536 3' -44.4 NC_002169.1 + 11132 0.77 0.950135
Target:  5'- gUUUAaUACAUGAUcUUUGCUUUCGUCg -3'
miRNA:   3'- -AGAUcAUGUGCUAcAAACGAAAGCAG- -5'
8536 3' -44.4 NC_002169.1 + 11761 0.77 0.950135
Target:  5'- ----aUACACGAUcUUUGCUUUCGUCc -3'
miRNA:   3'- agaucAUGUGCUAcAAACGAAAGCAG- -5'
8536 3' -44.4 NC_002169.1 + 42255 0.77 0.93516
Target:  5'- uUUUAGUACAUGAUcUUUGCUUUCaUCg -3'
miRNA:   3'- -AGAUCAUGUGCUAcAAACGAAAGcAG- -5'
8536 3' -44.4 NC_002169.1 + 104833 0.77 0.93516
Target:  5'- uUUUAGUACAUGAUcUUUGCUUUCaUCg -3'
miRNA:   3'- -AGAUCAUGUGCUAcAAACGAAAGcAG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.