miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8536 5' -43 NC_002169.1 + 105481 0.66 1
Target:  5'- -gGAcGAAAGCAAAcAUUGUGUACUu -3'
miRNA:   3'- agCUaCUUUCGUUUcUAGUACAUGAu -5'
8536 5' -43 NC_002169.1 + 14118 0.66 1
Target:  5'- uUCGAUGAcAGUguuGAGGUUAUuGUACa- -3'
miRNA:   3'- -AGCUACUuUCGu--UUCUAGUA-CAUGau -5'
8536 5' -43 NC_002169.1 + 16302 0.67 0.999999
Target:  5'- gUCGAUGAAAGgAguGAGA-CAUGUcACUu -3'
miRNA:   3'- -AGCUACUUUCgU--UUCUaGUACA-UGAu -5'
8536 5' -43 NC_002169.1 + 64392 0.67 0.999998
Target:  5'- aCGAauUGaAAAGCAAAGGUUgcGUGCUc -3'
miRNA:   3'- aGCU--AC-UUUCGUUUCUAGuaCAUGAu -5'
8536 5' -43 NC_002169.1 + 42222 0.67 0.999996
Target:  5'- -gGAcGAAAGCAAAGAUUGUGUu--- -3'
miRNA:   3'- agCUaCUUUCGUUUCUAGUACAugau -5'
8536 5' -43 NC_002169.1 + 119482 0.68 0.999992
Target:  5'- -gGAcGAAAGCAAAGAUCGUcUAUg- -3'
miRNA:   3'- agCUaCUUUCGUUUCUAGUAcAUGau -5'
8536 5' -43 NC_002169.1 + 129825 0.69 0.999938
Target:  5'- uUCGAcUGAAcgaacGCGacGAGAUCGUGUGCa- -3'
miRNA:   3'- -AGCU-ACUUu----CGU--UUCUAGUACAUGau -5'
8536 5' -43 NC_002169.1 + 42291 0.7 0.999853
Target:  5'- -gGAcGAAAGCAAAGAUUGUGUuugACUu -3'
miRNA:   3'- agCUaCUUUCGUUUCUAGUACA---UGAu -5'
8536 5' -43 NC_002169.1 + 105355 0.71 0.999675
Target:  5'- -gGAUGAAAGCAAAcAUgAUGUACc- -3'
miRNA:   3'- agCUACUUUCGUUUcUAgUACAUGau -5'
8536 5' -43 NC_002169.1 + 104869 0.71 0.999584
Target:  5'- -gGAcGAAAGCAAAGAUCGaGUagGCUGa -3'
miRNA:   3'- agCUaCUUUCGUUUCUAGUaCA--UGAU- -5'
8536 5' -43 NC_002169.1 + 41928 0.71 0.999472
Target:  5'- -gGAcGAAAGCAAAGAUCGaGUAUg- -3'
miRNA:   3'- agCUaCUUUCGUUUCUAGUaCAUGau -5'
8536 5' -43 NC_002169.1 + 19703 0.72 0.998428
Target:  5'- uUCGGUGAAAGaucAGggCAUGUGCg- -3'
miRNA:   3'- -AGCUACUUUCguuUCuaGUACAUGau -5'
8536 5' -43 NC_002169.1 + 10880 0.75 0.989733
Target:  5'- gUCGAaGAucuuggacgAAGCAAAGAUCGaGUACUAg -3'
miRNA:   3'- -AGCUaCU---------UUCGUUUCUAGUaCAUGAU- -5'
8536 5' -43 NC_002169.1 + 10969 0.78 0.952689
Target:  5'- uUCGAcGAAA-CAAAGAUCAUGUAUUAa -3'
miRNA:   3'- -AGCUaCUUUcGUUUCUAGUACAUGAU- -5'
8536 5' -43 NC_002169.1 + 118888 0.78 0.94309
Target:  5'- aUCGAUGAGAGCcuguAGAUCGgccgugaauuguUGUGCUGa -3'
miRNA:   3'- -AGCUACUUUCGuu--UCUAGU------------ACAUGAU- -5'
8536 5' -43 NC_002169.1 + 11332 0.79 0.937847
Target:  5'- gUCGAcGAAAGCAAAGAUCGUGcauuuCUGc -3'
miRNA:   3'- -AGCUaCUUUCGUUUCUAGUACau---GAU- -5'
8536 5' -43 NC_002169.1 + 80180 0.8 0.907128
Target:  5'- gUCGAUGAcguuguuuauuaAAGCGuuGAUCAUGUGCa- -3'
miRNA:   3'- -AGCUACU------------UUCGUuuCUAGUACAUGau -5'
8536 5' -43 NC_002169.1 + 105376 0.8 0.900088
Target:  5'- gUCGAcGAucuuggacaaAAGCAAAGAUCGUGUAUUAa -3'
miRNA:   3'- -AGCUaCU----------UUCGUUUCUAGUACAUGAU- -5'
8536 5' -43 NC_002169.1 + 11196 0.8 0.885135
Target:  5'- -gGAcGAAAGCAAAGAUCGaGUACUAg -3'
miRNA:   3'- agCUaCUUUCGUUUCUAGUaCAUGAU- -5'
8536 5' -43 NC_002169.1 + 10551 0.81 0.877233
Target:  5'- -aGAUGAAAGCAAAcAUUGUGUACUAa -3'
miRNA:   3'- agCUACUUUCGUUUcUAGUACAUGAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.