miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8538 3' -44.3 NC_002169.1 + 11572 0.66 0.999993
Target:  5'- -----aGUAcuCGAUCUUUGCUUUCaUCg -3'
miRNA:   3'- ucuuuaCGU--GCUAGAAACGAAAGcAG- -5'
8538 3' -44.3 NC_002169.1 + 41939 0.66 0.999993
Target:  5'- -uAGGUGUAUaAUUUUUGCUUUcCGUCa -3'
miRNA:   3'- ucUUUACGUGcUAGAAACGAAA-GCAG- -5'
8538 3' -44.3 NC_002169.1 + 11569 0.67 0.999989
Target:  5'- cGGAAAcuUGaaCACcAUCUUUGUUUUUGUCa -3'
miRNA:   3'- -UCUUU--AC--GUGcUAGAAACGAAAGCAG- -5'
8538 3' -44.3 NC_002169.1 + 45713 0.67 0.999979
Target:  5'- cGAGuaucUGCGCGA-CUUggccgGCUaUCGUCg -3'
miRNA:   3'- uCUUu---ACGUGCUaGAAa----CGAaAGCAG- -5'
8538 3' -44.3 NC_002169.1 + 107233 0.67 0.99996
Target:  5'- cGGGAUGCGCGGUCgUUGaa-UUGUUg -3'
miRNA:   3'- uCUUUACGUGCUAGaAACgaaAGCAG- -5'
8538 3' -44.3 NC_002169.1 + 67995 0.67 0.99996
Target:  5'- aAGAAAUGCucgaauUGAUCUggucGCUUcuguacacgUCGUCg -3'
miRNA:   3'- -UCUUUACGu-----GCUAGAaa--CGAA---------AGCAG- -5'
8538 3' -44.3 NC_002169.1 + 59813 0.68 0.99992
Target:  5'- cAGAAuuuuuauuucguucAUGuCGCGAUCgaugUUGCcguUUUCGUCg -3'
miRNA:   3'- -UCUU--------------UAC-GUGCUAGa---AACG---AAAGCAG- -5'
8538 3' -44.3 NC_002169.1 + 38901 0.68 0.999871
Target:  5'- gAGGAuUGCACGAcgagUCguuaagUUGUUgUCGUCg -3'
miRNA:   3'- -UCUUuACGUGCU----AGa-----AACGAaAGCAG- -5'
8538 3' -44.3 NC_002169.1 + 104836 0.69 0.99978
Target:  5'- --uAGUaCAUGAUCUUUGCUUUCaUCg -3'
miRNA:   3'- ucuUUAcGUGCUAGAAACGAAAGcAG- -5'
8538 3' -44.3 NC_002169.1 + 119613 0.69 0.99978
Target:  5'- --uAGUaCAUGAUCUUUGCUUUCaUCg -3'
miRNA:   3'- ucuUUAcGUGCUAGAAACGAAAGcAG- -5'
8538 3' -44.3 NC_002169.1 + 11009 0.69 0.99978
Target:  5'- --uAGUaCAUGAUCUUUGCUUUCaUCg -3'
miRNA:   3'- ucuUUAcGUGCUAGAAACGAAAGcAG- -5'
8538 3' -44.3 NC_002169.1 + 42189 0.69 0.99978
Target:  5'- --uAGUaCAUGAUCUUUGCUUUCaUCg -3'
miRNA:   3'- ucuUUAcGUGCUAGAAACGAAAGcAG- -5'
8538 3' -44.3 NC_002169.1 + 42258 0.69 0.99978
Target:  5'- --uAGUaCAUGAUCUUUGCUUUCaUCg -3'
miRNA:   3'- ucuUUAcGUGCUAGAAACGAAAGcAG- -5'
8538 3' -44.3 NC_002169.1 + 53043 0.69 0.99978
Target:  5'- --uAGUaCAUGAUCUUUGCUUUCaUCg -3'
miRNA:   3'- ucuUUAcGUGCUAGAAACGAAAGcAG- -5'
8538 3' -44.3 NC_002169.1 + 119515 0.69 0.999716
Target:  5'- --uAGUaCACGAUCUUUGCUUUUaUCg -3'
miRNA:   3'- ucuUUAcGUGCUAGAAACGAAAGcAG- -5'
8538 3' -44.3 NC_002169.1 + 10513 0.69 0.999538
Target:  5'- uGAAAcccacaACGAUCUUUGCUUUCaUCg -3'
miRNA:   3'- uCUUUacg---UGCUAGAAACGAAAGcAG- -5'
8538 3' -44.3 NC_002169.1 + 42446 0.7 0.999417
Target:  5'- ------aCACaAUCUUUGCUUUCGUCc -3'
miRNA:   3'- ucuuuacGUGcUAGAAACGAAAGCAG- -5'
8538 3' -44.3 NC_002169.1 + 42377 0.7 0.999417
Target:  5'- ------aCACaAUCUUUGCUUUCGUCc -3'
miRNA:   3'- ucuuuacGUGcUAGAAACGAAAGCAG- -5'
8538 3' -44.3 NC_002169.1 + 2627 0.7 0.999417
Target:  5'- aGGGAAUGCACcAUCg--GCUcgauUUCGUUg -3'
miRNA:   3'- -UCUUUACGUGcUAGaaaCGA----AAGCAG- -5'
8538 3' -44.3 NC_002169.1 + 105147 0.71 0.99862
Target:  5'- -----cGCACauGAUCUUUGCUUUCaUCg -3'
miRNA:   3'- ucuuuaCGUG--CUAGAAACGAAAGcAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.