miRNA display CGI


Results 1 - 20 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8539 3' -38 NC_002169.1 + 83588 0.71 1
Target:  5'- --aAAUACACAua--UUGUUUUCAUCg -3'
miRNA:   3'- aaaUUAUGUGUuagaAACGAAAGUAG- -5'
8539 3' -38 NC_002169.1 + 18625 0.68 1
Target:  5'- aUUGAUA-AC-AUCUUUGCcgUCAUCa -3'
miRNA:   3'- aAAUUAUgUGuUAGAAACGaaAGUAG- -5'
8539 3' -38 NC_002169.1 + 41059 0.66 1
Target:  5'- ---cGUACACAcacAUUggUGCgUUCAUCa -3'
miRNA:   3'- aaauUAUGUGU---UAGaaACGaAAGUAG- -5'
8539 3' -38 NC_002169.1 + 5638 0.67 1
Target:  5'- ---uGUACGCGAUCgugauuguaugugGCUUUCAUg -3'
miRNA:   3'- aaauUAUGUGUUAGaaa----------CGAAAGUAg -5'
8539 3' -38 NC_002169.1 + 78791 0.66 1
Target:  5'- cUUGAUGCGCGAccggCUcgGCUaaCAUCu -3'
miRNA:   3'- aAAUUAUGUGUUa---GAaaCGAaaGUAG- -5'
8539 3' -38 NC_002169.1 + 5798 0.67 1
Target:  5'- ---uGUAUACAuUUUUUGCUauaUCAUCa -3'
miRNA:   3'- aaauUAUGUGUuAGAAACGAa--AGUAG- -5'
8539 3' -38 NC_002169.1 + 77515 0.67 1
Target:  5'- ---cGUGCAuCAAUCgc-GUUUUCGUCa -3'
miRNA:   3'- aaauUAUGU-GUUAGaaaCGAAAGUAG- -5'
8539 3' -38 NC_002169.1 + 41961 0.68 1
Target:  5'- --cAAUAUuCAAUgUUUGCgUUCAUCg -3'
miRNA:   3'- aaaUUAUGuGUUAgAAACGaAAGUAG- -5'
8539 3' -38 NC_002169.1 + 124055 0.7 1
Target:  5'- --aAAUACACAAUCgucGUcgUCGUCg -3'
miRNA:   3'- aaaUUAUGUGUUAGaaaCGaaAGUAG- -5'
8539 3' -38 NC_002169.1 + 41940 0.7 1
Target:  5'- --aGGUGUAUAAUUUUUGCUUUcCGUCa -3'
miRNA:   3'- aaaUUAUGUGUUAGAAACGAAA-GUAG- -5'
8539 3' -38 NC_002169.1 + 11563 0.72 1
Target:  5'- cUUGA-ACACcAUCUUUGUUUUUGUCa -3'
miRNA:   3'- aAAUUaUGUGuUAGAAACGAAAGUAG- -5'
8539 3' -38 NC_002169.1 + 105514 0.78 0.999711
Target:  5'- --cGGUACAUcAUgUUUGCUUUCAUCc -3'
miRNA:   3'- aaaUUAUGUGuUAgAAACGAAAGUAG- -5'
8539 3' -38 NC_002169.1 + 104957 0.83 0.987254
Target:  5'- ---cAUAguCAAUCUUUGCUUUCGUCc -3'
miRNA:   3'- aaauUAUguGUUAGAAACGAAAGUAG- -5'
8539 3' -38 NC_002169.1 + 105026 0.83 0.985321
Target:  5'- ----cUACuCGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- aaauuAUGuGUUAGAAACGAAAGUAG- -5'
8539 3' -38 NC_002169.1 + 41771 0.85 0.96102
Target:  5'- ---cAUACuCGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- aaauUAUGuGUUAGAAACGAAAGUAG- -5'
8539 3' -38 NC_002169.1 + 10520 0.86 0.941849
Target:  5'- -----cACaACGAUCUUUGCUUUCAUCg -3'
miRNA:   3'- aaauuaUG-UGUUAGAAACGAAAGUAG- -5'
8539 3' -38 NC_002169.1 + 119324 0.87 0.917423
Target:  5'- ---cAUAgACGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- aaauUAUgUGUUAGAAACGAAAGUAG- -5'
8539 3' -38 NC_002169.1 + 53092 0.89 0.852954
Target:  5'- ---cAUACuCAAUCUUUGCUUUCAUCg -3'
miRNA:   3'- aaauUAUGuGUUAGAAACGAAAGUAG- -5'
8539 3' -38 NC_002169.1 + 105145 0.9 0.843545
Target:  5'- -----cACAUGAUCUUUGCUUUCAUCg -3'
miRNA:   3'- aaauuaUGUGUUAGAAACGAAAGUAG- -5'
8539 3' -38 NC_002169.1 + 11636 0.91 0.803346
Target:  5'- -cUAGUACAUGAUgUUUGCUUUCAUCg -3'
miRNA:   3'- aaAUUAUGUGUUAgAAACGAAAGUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.