Results 1 - 20 of 78 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8539 | 5' | -45.8 | NC_002169.1 | + | 49163 | 0.66 | 0.999968 |
Target: 5'- aCGACGAuGGCGccGAuaccgauaUUGUGUACa- -3' miRNA: 3'- aGCUGCUuUCGUuuCU--------AGCACAUGau -5' |
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8539 | 5' | -45.8 | NC_002169.1 | + | 97066 | 0.66 | 0.999968 |
Target: 5'- aUCGACGAuc-CGAAcGUUGUGUACa- -3' miRNA: 3'- -AGCUGCUuucGUUUcUAGCACAUGau -5' |
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8539 | 5' | -45.8 | NC_002169.1 | + | 70186 | 0.66 | 0.999956 |
Target: 5'- gUCGACGAGGGCAAcaaGUCG-GUGg-- -3' miRNA: 3'- -AGCUGCUUUCGUUuc-UAGCaCAUgau -5' |
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8539 | 5' | -45.8 | NC_002169.1 | + | 32962 | 0.66 | 0.999941 |
Target: 5'- uUCGACGAAAcgacGCAAAucGGUCaGcGUACUAg -3' miRNA: 3'- -AGCUGCUUU----CGUUU--CUAG-CaCAUGAU- -5' |
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8539 | 5' | -45.8 | NC_002169.1 | + | 36267 | 0.67 | 0.999862 |
Target: 5'- aUCGACGcgauacuGCAAAGAcaGUGUGCg- -3' miRNA: 3'- -AGCUGCuuu----CGUUUCUagCACAUGau -5' |
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8539 | 5' | -45.8 | NC_002169.1 | + | 37425 | 0.67 | 0.999859 |
Target: 5'- cCGACGAAGGCcucaccaucgucgGccGAUCGcUGUACa- -3' miRNA: 3'- aGCUGCUUUCG-------------UuuCUAGC-ACAUGau -5' |
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8539 | 5' | -45.8 | NC_002169.1 | + | 41105 | 0.68 | 0.99962 |
Target: 5'- cUGACGAuAGUgcGGAUCG-GUGCUc -3' miRNA: 3'- aGCUGCUuUCGuuUCUAGCaCAUGAu -5' |
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8539 | 5' | -45.8 | NC_002169.1 | + | 127910 | 0.68 | 0.99962 |
Target: 5'- gCGGCGAagAAGCAuugaaGGGAUCGUGgugaUGCg- -3' miRNA: 3'- aGCUGCU--UUCGU-----UUCUAGCAC----AUGau -5' |
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8539 | 5' | -45.8 | NC_002169.1 | + | 4197 | 0.68 | 0.99962 |
Target: 5'- gCGGCGGAGGCGAAGGacuuggugaUgGUGUAa-- -3' miRNA: 3'- aGCUGCUUUCGUUUCU---------AgCACAUgau -5' |
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8539 | 5' | -45.8 | NC_002169.1 | + | 99937 | 0.68 | 0.999397 |
Target: 5'- aUUGACGcGAGGCGGcgcAGGUCGUgGUAUUGa -3' miRNA: 3'- -AGCUGC-UUUCGUU---UCUAGCA-CAUGAU- -5' |
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8539 | 5' | -45.8 | NC_002169.1 | + | 43984 | 0.69 | 0.998292 |
Target: 5'- gUCGuCGAAAGUAAAGA-CGUGcACg- -3' miRNA: 3'- -AGCuGCUUUCGUUUCUaGCACaUGau -5' |
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8539 | 5' | -45.8 | NC_002169.1 | + | 53494 | 0.7 | 0.99582 |
Target: 5'- aUCGACGggGGUguGGAGAUCGUa----- -3' miRNA: 3'- -AGCUGCuuUCG--UUUCUAGCAcaugau -5' |
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8539 | 5' | -45.8 | NC_002169.1 | + | 26639 | 0.72 | 0.986422 |
Target: 5'- cUCGGCGAGGGCAAA-AggGUGUACg- -3' miRNA: 3'- -AGCUGCUUUCGUUUcUagCACAUGau -5' |
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8539 | 5' | -45.8 | NC_002169.1 | + | 37283 | 0.72 | 0.982521 |
Target: 5'- aUCGACG-GAGCAGGGAUCGaUG-ACg- -3' miRNA: 3'- -AGCUGCuUUCGUUUCUAGC-ACaUGau -5' |
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8539 | 5' | -45.8 | NC_002169.1 | + | 104799 | 0.73 | 0.97783 |
Target: 5'- -gGACGAAAGCAAAGAUUG---ACUAu -3' miRNA: 3'- agCUGCUUUCGUUUCUAGCacaUGAU- -5' |
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8539 | 5' | -45.8 | NC_002169.1 | + | 129825 | 0.73 | 0.97783 |
Target: 5'- uUCGAcugaaCGAAcGCGacGAGAUCGUGUGCa- -3' miRNA: 3'- -AGCU-----GCUUuCGU--UUCUAGCACAUGau -5' |
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8539 | 5' | -45.8 | NC_002169.1 | + | 41904 | 0.75 | 0.949701 |
Target: 5'- -gGACGAAAGCAAA-AUCGaGUACUAa -3' miRNA: 3'- agCUGCUUUCGUUUcUAGCaCAUGAU- -5' |
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8539 | 5' | -45.8 | NC_002169.1 | + | 118888 | 0.75 | 0.945011 |
Target: 5'- aUCGAUGAGAGCcuguAGAUCGgccgugaauuguUGUGCUGa -3' miRNA: 3'- -AGCUGCUUUCGuu--UCUAGC------------ACAUGAU- -5' |
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8539 | 5' | -45.8 | NC_002169.1 | + | 10969 | 0.76 | 0.910977 |
Target: 5'- uUCGACGAAA-CAAAGAUCaUGUAUUAa -3' miRNA: 3'- -AGCUGCUUUcGUUUCUAGcACAUGAU- -5' |
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8539 | 5' | -45.8 | NC_002169.1 | + | 53060 | 0.78 | 0.832549 |
Target: 5'- -gGAUGAAAGCAAAGAUgaUGUACUAa -3' miRNA: 3'- agCUGCUUUCGUUUCUAgcACAUGAU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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