miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8540 5' -44.3 NC_002169.1 + 127908 0.66 0.999997
Target:  5'- uUGcGGCGAagAAGCAuugaaGGGAUCGUGg---- -3'
miRNA:   3'- -AC-CUGCU--UUCGU-----UUCUAGCACauaau -5'
8540 5' -44.3 NC_002169.1 + 1188 0.66 0.999996
Target:  5'- cGGGCGAGAGCGGAGuuuuaCGUu----- -3'
miRNA:   3'- aCCUGCUUUCGUUUCua---GCAcauaau -5'
8540 5' -44.3 NC_002169.1 + 21289 0.66 0.999994
Target:  5'- uUGGACGGGAGacguaGGAGA-CGUGg---- -3'
miRNA:   3'- -ACCUGCUUUCg----UUUCUaGCACauaau -5'
8540 5' -44.3 NC_002169.1 + 95036 0.67 0.999988
Target:  5'- aUGGACGcGAGCAAcgagucGAUCuUGUGUUu -3'
miRNA:   3'- -ACCUGCuUUCGUUu-----CUAGcACAUAAu -5'
8540 5' -44.3 NC_002169.1 + 129820 0.67 0.999977
Target:  5'- cUGaACGAAcGCGacGAGAUCGUGUGc-- -3'
miRNA:   3'- -ACcUGCUUuCGU--UUCUAGCACAUaau -5'
8540 5' -44.3 NC_002169.1 + 26602 0.67 0.999969
Target:  5'- cGGGCGugucGCGGAGcgcuacgauaGUCGUGUAUUu -3'
miRNA:   3'- aCCUGCuuu-CGUUUC----------UAGCACAUAAu -5'
8540 5' -44.3 NC_002169.1 + 10551 0.68 0.999862
Target:  5'- -aGAUGAAAGCAAAcAUUGUGUAc-- -3'
miRNA:   3'- acCUGCUUUCGUUUcUAGCACAUaau -5'
8540 5' -44.3 NC_002169.1 + 64769 0.68 0.999862
Target:  5'- uUGGGCGAcuuGGGCAucGGUCGUuUGUc- -3'
miRNA:   3'- -ACCUGCU---UUCGUuuCUAGCAcAUAau -5'
8540 5' -44.3 NC_002169.1 + 37286 0.69 0.999819
Target:  5'- cGGAuCGAcgGAGCAGGGAUCGaUGa---- -3'
miRNA:   3'- aCCU-GCU--UUCGUUUCUAGC-ACauaau -5'
8540 5' -44.3 NC_002169.1 + 29549 0.69 0.999697
Target:  5'- gUGGACGAGAaCGAGGAcgaGUGUAa-- -3'
miRNA:   3'- -ACCUGCUUUcGUUUCUag-CACAUaau -5'
8540 5' -44.3 NC_002169.1 + 10971 0.7 0.999224
Target:  5'- -cGACGAAA-CAAAGAUCaUGUAUUAa -3'
miRNA:   3'- acCUGCUUUcGUUUCUAGcACAUAAU- -5'
8540 5' -44.3 NC_002169.1 + 105128 0.71 0.997401
Target:  5'- --uACGAAAGCAAAGAUCaUGUAc-- -3'
miRNA:   3'- accUGCUUUCGUUUCUAGcACAUaau -5'
8540 5' -44.3 NC_002169.1 + 41902 0.73 0.989013
Target:  5'- uUGGACGAAAGCAAA-AUCGaGUAc-- -3'
miRNA:   3'- -ACCUGCUUUCGUUUcUAGCaCAUaau -5'
8540 5' -44.3 NC_002169.1 + 52823 0.73 0.989013
Target:  5'- -cGAUGAAAGCAAAcAUCGUGUAc-- -3'
miRNA:   3'- acCUGCUUUCGUUUcUAGCACAUaau -5'
8540 5' -44.3 NC_002169.1 + 104989 0.74 0.985612
Target:  5'- -cGAUGAAAGCAAAGAUCaUGUGc-- -3'
miRNA:   3'- acCUGCUUUCGUUUCUAGcACAUaau -5'
8540 5' -44.3 NC_002169.1 + 52934 0.74 0.983636
Target:  5'- -cGAUGAAAGCAAAGAUUGaGUAUg- -3'
miRNA:   3'- acCUGCUUUCGUUUCUAGCaCAUAau -5'
8540 5' -44.3 NC_002169.1 + 42417 0.74 0.979076
Target:  5'- -cGAUGAAAGCAAAGAUCaUGUAc-- -3'
miRNA:   3'- acCUGCUUUCGUUUCUAGcACAUaau -5'
8540 5' -44.3 NC_002169.1 + 42348 0.74 0.979076
Target:  5'- -cGAUGAAAGCAAAGAUCaUGUAc-- -3'
miRNA:   3'- acCUGCUUUCGUUUCUAGcACAUaau -5'
8540 5' -44.3 NC_002169.1 + 10851 0.74 0.979076
Target:  5'- -cGAUGAAAGCAAAGAUCaUGUAc-- -3'
miRNA:   3'- acCUGCUUUCGUUUCUAGcACAUaau -5'
8540 5' -44.3 NC_002169.1 + 119454 0.74 0.979076
Target:  5'- -cGAUGAAAGCAAAGAUCaUGUAc-- -3'
miRNA:   3'- acCUGCUUUCGUUUCUAGcACAUaau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.