miRNA display CGI


Results 1 - 20 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8551 3' -42.1 NC_002169.1 + 5638 0.66 1
Target:  5'- ---uGUACGCGAUCgugauuguaugugGCUUUCAUg -3'
miRNA:   3'- aaagUAUGUGCUAGaaa----------CGAAAGUAg -5'
8551 3' -42.1 NC_002169.1 + 118724 0.66 1
Target:  5'- aUUCAcgGC-CGAUCUacagGCUcUCAUCg -3'
miRNA:   3'- aAAGUa-UGuGCUAGAaa--CGAaAGUAG- -5'
8551 3' -42.1 NC_002169.1 + 5866 0.66 1
Target:  5'- --cCAUACaACGAUCUUgGCgUUCAgUCa -3'
miRNA:   3'- aaaGUAUG-UGCUAGAAaCGaAAGU-AG- -5'
8551 3' -42.1 NC_002169.1 + 68037 0.66 1
Target:  5'- -cUCAUAUACuGAgacUCUUUGCaUUCGUg -3'
miRNA:   3'- aaAGUAUGUG-CU---AGAAACGaAAGUAg -5'
8551 3' -42.1 NC_002169.1 + 31416 0.67 0.999999
Target:  5'- --gCGUGCACGAUCUcgucgaUGgUUUUGUCg -3'
miRNA:   3'- aaaGUAUGUGCUAGAa-----ACgAAAGUAG- -5'
8551 3' -42.1 NC_002169.1 + 44145 0.68 0.999997
Target:  5'- -aUCGUGCACG-UCUUUaCUUUCGa- -3'
miRNA:   3'- aaAGUAUGUGCuAGAAAcGAAAGUag -5'
8551 3' -42.1 NC_002169.1 + 105513 0.69 0.999987
Target:  5'- ---gGUACAUcAUgUUUGCUUUCAUCc -3'
miRNA:   3'- aaagUAUGUGcUAgAAACGAAAGUAG- -5'
8551 3' -42.1 NC_002169.1 + 29677 0.7 0.999975
Target:  5'- -gUCAaACGCGAUCggUUGcCUUUUGUCu -3'
miRNA:   3'- aaAGUaUGUGCUAGa-AAC-GAAAGUAG- -5'
8551 3' -42.1 NC_002169.1 + 105323 0.71 0.999793
Target:  5'- ---aGUACACaAUgUUUGCUUUCGUCc -3'
miRNA:   3'- aaagUAUGUGcUAgAAACGAAAGUAG- -5'
8551 3' -42.1 NC_002169.1 + 10324 0.71 0.999731
Target:  5'- -aUCGUACAUGAacaaagcaUCUUUGUcaUCGUCa -3'
miRNA:   3'- aaAGUAUGUGCU--------AGAAACGaaAGUAG- -5'
8551 3' -42.1 NC_002169.1 + 10709 0.73 0.998621
Target:  5'- ---aGUACACaAUgUUUGCUUUCAUCu -3'
miRNA:   3'- aaagUAUGUGcUAgAAACGAAAGUAG- -5'
8551 3' -42.1 NC_002169.1 + 42381 0.76 0.985423
Target:  5'- --cCAaACACaAUCUUUGCUUUCGUCc -3'
miRNA:   3'- aaaGUaUGUGcUAGAAACGAAAGUAG- -5'
8551 3' -42.1 NC_002169.1 + 59828 0.77 0.983371
Target:  5'- gUUCAUGuCGCGAUCgaugUUGCcguUUUCGUCg -3'
miRNA:   3'- aAAGUAU-GUGCUAGa---AACG---AAAGUAG- -5'
8551 3' -42.1 NC_002169.1 + 52902 0.79 0.95842
Target:  5'- ---aGUACAUcAUCUUUGCUUUCAUCc -3'
miRNA:   3'- aaagUAUGUGcUAGAAACGAAAGUAG- -5'
8551 3' -42.1 NC_002169.1 + 104961 0.79 0.944537
Target:  5'- gUUUCAUAguCaAUCUUUGCUUUCGUCc -3'
miRNA:   3'- -AAAGUAUguGcUAGAAACGAAAGUAG- -5'
8551 3' -42.1 NC_002169.1 + 42451 0.81 0.89408
Target:  5'- -gUCAaACACaAUCUUUGCUUUCGUCc -3'
miRNA:   3'- aaAGUaUGUGcUAGAAACGAAAGUAG- -5'
8551 3' -42.1 NC_002169.1 + 10520 0.83 0.843817
Target:  5'- -----cACaACGAUCUUUGCUUUCAUCg -3'
miRNA:   3'- aaaguaUG-UGCUAGAAACGAAAGUAG- -5'
8551 3' -42.1 NC_002169.1 + 11285 0.83 0.815208
Target:  5'- ---aAUACACaAUCUUUGCUUUCAUCg -3'
miRNA:   3'- aaagUAUGUGcUAGAAACGAAAGUAG- -5'
8551 3' -42.1 NC_002169.1 + 11038 0.84 0.79504
Target:  5'- ---aGUACuCGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- aaagUAUGuGCUAGAAACGAAAGUAG- -5'
8551 3' -42.1 NC_002169.1 + 10711 0.84 0.79504
Target:  5'- ---aGUACuCGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- aaagUAUGuGCUAGAAACGAAAGUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.