miRNA display CGI


Results 1 - 20 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8553 5' -43.5 NC_002169.1 + 16143 0.66 1
Target:  5'- -gACAUG-UCUcacucCUUUCAUCGACa -3'
miRNA:   3'- caUGUACuAGAaac--GAAAGUAGCUGc -5'
8553 5' -43.5 NC_002169.1 + 112615 0.66 1
Target:  5'- aGUGCGUGGcaaugauccuaUUaUUGCcgUCGUCGAUGg -3'
miRNA:   3'- -CAUGUACU-----------AGaAACGaaAGUAGCUGC- -5'
8553 5' -43.5 NC_002169.1 + 78656 0.66 0.999999
Target:  5'- -gACGuUGAUUUuaUUGCUgUUGUCGACGa -3'
miRNA:   3'- caUGU-ACUAGA--AACGAaAGUAGCUGC- -5'
8553 5' -43.5 NC_002169.1 + 42376 0.67 0.999998
Target:  5'- -cACA--AUCUUUGCUUUCGuccaagauccUCGAUGa -3'
miRNA:   3'- caUGUacUAGAAACGAAAGU----------AGCUGC- -5'
8553 5' -43.5 NC_002169.1 + 41943 0.67 0.999995
Target:  5'- uGUAUA--AUUUUUGCUUuccgucaaagaUCGUCGACGa -3'
miRNA:   3'- -CAUGUacUAGAAACGAA-----------AGUAGCUGC- -5'
8553 5' -43.5 NC_002169.1 + 104957 0.68 0.999993
Target:  5'- -cAUAgucaAUCUUUGCUUucguccaagaUCGUCGACGa -3'
miRNA:   3'- caUGUac--UAGAAACGAA----------AGUAGCUGC- -5'
8553 5' -43.5 NC_002169.1 + 67344 0.68 0.999993
Target:  5'- -aACAUGAcUUUUGUgUUUAUCGGCa -3'
miRNA:   3'- caUGUACUaGAAACGaAAGUAGCUGc -5'
8553 5' -43.5 NC_002169.1 + 77727 0.68 0.99999
Target:  5'- aUACAUGGUCggaugaaUGUUcgacgcgUCGUCGGCGa -3'
miRNA:   3'- cAUGUACUAGaa-----ACGAa------AGUAGCUGC- -5'
8553 5' -43.5 NC_002169.1 + 42445 0.68 0.999986
Target:  5'- -cACA--AUCUUUGCUUucguccaagaUCGUCGAUGa -3'
miRNA:   3'- caUGUacUAGAAACGAA----------AGUAGCUGC- -5'
8553 5' -43.5 NC_002169.1 + 119330 0.68 0.99998
Target:  5'- -----cGAUCUUUGCUUUCGUCc--- -3'
miRNA:   3'- cauguaCUAGAAACGAAAGUAGcugc -5'
8553 5' -43.5 NC_002169.1 + 10709 0.69 0.999948
Target:  5'- aGUACAcaAUgUUUGCUUUCAUCuACGa -3'
miRNA:   3'- -CAUGUacUAgAAACGAAAGUAGcUGC- -5'
8553 5' -43.5 NC_002169.1 + 123278 0.71 0.999553
Target:  5'- -gACGUaGAUCUUguucGCUauaucgaaUUCGUCGACGg -3'
miRNA:   3'- caUGUA-CUAGAAa---CGA--------AAGUAGCUGC- -5'
8553 5' -43.5 NC_002169.1 + 105513 0.71 0.999435
Target:  5'- gGUACAUcAUgUUUGCUUUCAUCcaagaucuugGACGa -3'
miRNA:   3'- -CAUGUAcUAgAAACGAAAGUAG----------CUGC- -5'
8553 5' -43.5 NC_002169.1 + 78473 0.71 0.999292
Target:  5'- cUACGUGGUCg-UGUacaaUUUCGUCGACa -3'
miRNA:   3'- cAUGUACUAGaaACG----AAAGUAGCUGc -5'
8553 5' -43.5 NC_002169.1 + 11708 0.72 0.998908
Target:  5'- gGUugAUGAUCUUcauuugaggaUGaUUUCAUCGAUGa -3'
miRNA:   3'- -CAugUACUAGAA----------ACgAAAGUAGCUGC- -5'
8553 5' -43.5 NC_002169.1 + 41772 0.72 0.998658
Target:  5'- aUACucGAUCUUUGCUUUCGuccaagauccUCGAUGa -3'
miRNA:   3'- cAUGuaCUAGAAACGAAAGU----------AGCUGC- -5'
8553 5' -43.5 NC_002169.1 + 105036 0.72 0.998009
Target:  5'- uUGCAUcagccuacucGAUCUUUGCUUUCGuccaagaucuUCGAUGa -3'
miRNA:   3'- cAUGUA----------CUAGAAACGAAAGU----------AGCUGC- -5'
8553 5' -43.5 NC_002169.1 + 80010 0.74 0.995171
Target:  5'- -cACAUGAUCaacGCUUuaauaaacaacgUCAUCGACGa -3'
miRNA:   3'- caUGUACUAGaaaCGAA------------AGUAGCUGC- -5'
8553 5' -43.5 NC_002169.1 + 42061 0.76 0.982473
Target:  5'- aGUACucGAUCUUUGCUUUCGuccaagauccUCGAUGa -3'
miRNA:   3'- -CAUGuaCUAGAAACGAAAGU----------AGCUGC- -5'
8553 5' -43.5 NC_002169.1 + 105690 0.76 0.974971
Target:  5'- aUACAcGAUCUUUGCUUUC-UCGAa- -3'
miRNA:   3'- cAUGUaCUAGAAACGAAAGuAGCUgc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.