miRNA display CGI


Results 1 - 20 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8557 3' -41.9 NC_002169.1 + 111087 0.66 1
Target:  5'- -gUAGUACAUGuUGUgcaagUGUUUugUCGUCu -3'
miRNA:   3'- aaAUCAUGUGCuACAa----ACGAA--AGUAG- -5'
8557 3' -41.9 NC_002169.1 + 41772 0.66 1
Target:  5'- ----aUACuCGAUcUUUGCUUUCGUCc -3'
miRNA:   3'- aaaucAUGuGCUAcAAACGAAAGUAG- -5'
8557 3' -41.9 NC_002169.1 + 95753 0.66 1
Target:  5'- aUUAGUAUGCGAcucagcauuuccgugUGUUcguUGCgcUCGUCg -3'
miRNA:   3'- aAAUCAUGUGCU---------------ACAA---ACGaaAGUAG- -5'
8557 3' -41.9 NC_002169.1 + 119325 0.68 0.999999
Target:  5'- ----aUAgACGAUcUUUGCUUUCGUCc -3'
miRNA:   3'- aaaucAUgUGCUAcAAACGAAAGUAG- -5'
8557 3' -41.9 NC_002169.1 + 11281 0.68 0.999999
Target:  5'- aUUUAaUACACaAUcUUUGCUUUCAUCg -3'
miRNA:   3'- -AAAUcAUGUGcUAcAAACGAAAGUAG- -5'
8557 3' -41.9 NC_002169.1 + 10520 0.68 0.999998
Target:  5'- -----cACaACGAUcUUUGCUUUCAUCg -3'
miRNA:   3'- aaaucaUG-UGCUAcAAACGAAAGUAG- -5'
8557 3' -41.9 NC_002169.1 + 105690 0.68 0.999998
Target:  5'- ----aUACACGAUcUUUGCUUUC-UCg -3'
miRNA:   3'- aaaucAUGUGCUAcAAACGAAAGuAG- -5'
8557 3' -41.9 NC_002169.1 + 105202 0.72 0.999628
Target:  5'- uUUUAaUACACGAUcUUUGCUUUUGUCc -3'
miRNA:   3'- -AAAUcAUGUGCUAcAAACGAAAGUAG- -5'
8557 3' -41.9 NC_002169.1 + 53233 0.73 0.999395
Target:  5'- ----aUACAUGAUcUUUGCUUUCGUCc -3'
miRNA:   3'- aaaucAUGUGCUAcAAACGAAAGUAG- -5'
8557 3' -41.9 NC_002169.1 + 105145 0.73 0.999047
Target:  5'- -----cACAUGAUcUUUGCUUUCAUCg -3'
miRNA:   3'- aaaucaUGUGCUAcAAACGAAAGUAG- -5'
8557 3' -41.9 NC_002169.1 + 11366 0.74 0.99682
Target:  5'- uUUUAaUACAUGAUcUUUGCUUUCGUCc -3'
miRNA:   3'- -AAAUcAUGUGCUAcAAACGAAAGUAG- -5'
8557 3' -41.9 NC_002169.1 + 104769 0.75 0.996195
Target:  5'- ----aUACAUGAUcUUUGCUUUCGUCa -3'
miRNA:   3'- aaaucAUGUGCUAcAAACGAAAGUAG- -5'
8557 3' -41.9 NC_002169.1 + 52898 0.77 0.986743
Target:  5'- uUUUAGUACAUcAUcUUUGCUUUCAUCc -3'
miRNA:   3'- -AAAUCAUGUGcUAcAAACGAAAGUAG- -5'
8557 3' -41.9 NC_002169.1 + 11132 0.77 0.986743
Target:  5'- gUUUAaUACAUGAUcUUUGCUUUCGUCg -3'
miRNA:   3'- -AAAUcAUGUGCUAcAAACGAAAGUAG- -5'
8557 3' -41.9 NC_002169.1 + 11761 0.77 0.984828
Target:  5'- ----aUACACGAUcUUUGCUUUCGUCc -3'
miRNA:   3'- aaaucAUGUGCUAcAAACGAAAGUAG- -5'
8557 3' -41.9 NC_002169.1 + 120230 0.79 0.957088
Target:  5'- ----aUACACGAUcUUUGCUUUCGUCg -3'
miRNA:   3'- aaaucAUGUGCUAcAAACGAAAGUAG- -5'
8557 3' -41.9 NC_002169.1 + 11173 0.79 0.957088
Target:  5'- ----aUGCACGAUcUUUGCUUUCGUCg -3'
miRNA:   3'- aaaucAUGUGCUAcAAACGAAAGUAG- -5'
8557 3' -41.9 NC_002169.1 + 11036 0.79 0.952657
Target:  5'- -cUAGUACuCGAUcUUUGCUUUCGUCc -3'
miRNA:   3'- aaAUCAUGuGCUAcAAACGAAAGUAG- -5'
8557 3' -41.9 NC_002169.1 + 10709 0.79 0.952657
Target:  5'- -cUAGUACuCGAUcUUUGCUUUCGUCc -3'
miRNA:   3'- aaAUCAUGuGCUAcAAACGAAAGUAG- -5'
8557 3' -41.9 NC_002169.1 + 105407 0.79 0.947929
Target:  5'- cUUUAaUACACGAUcUUUGCUUUCAUCc -3'
miRNA:   3'- -AAAUcAUGUGCUAcAAACGAAAGUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.