miRNA display CGI


Results 1 - 20 of 72 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8557 5' -45.2 NC_002169.1 + 29549 0.66 0.999962
Target:  5'- gUGGACGAGAaCGAGGAcgaGUGUaaaACUAa -3'
miRNA:   3'- -ACCUGCUUUcGUUUCUag-UACA---UGAU- -5'
8557 5' -45.2 NC_002169.1 + 64769 0.66 0.999948
Target:  5'- uUGGGCGAcuuGGGCAucGGUCGuuUGU-CUGa -3'
miRNA:   3'- -ACCUGCU---UUCGUuuCUAGU--ACAuGAU- -5'
8557 5' -45.2 NC_002169.1 + 37286 0.67 0.99993
Target:  5'- cGGAuCGAcgGAGCAGGGAUCgAUG-ACg- -3'
miRNA:   3'- aCCU-GCU--UUCGUUUCUAG-UACaUGau -5'
8557 5' -45.2 NC_002169.1 + 80175 0.67 0.999876
Target:  5'- -uGACGuuguuuauuAAAGCGuuGAUCAUGUGCa- -3'
miRNA:   3'- acCUGC---------UUUCGUuuCUAGUACAUGau -5'
8557 5' -45.2 NC_002169.1 + 101920 0.69 0.999292
Target:  5'- cGGACGAAAGCGugccGAUCAaugacgacGUGCa- -3'
miRNA:   3'- aCCUGCUUUCGUuu--CUAGUa-------CAUGau -5'
8557 5' -45.2 NC_002169.1 + 52934 0.69 0.999118
Target:  5'- -cGAUGAAAGCAAAGAUUGaGUAUg- -3'
miRNA:   3'- acCUGCUUUCGUUUCUAGUaCAUGau -5'
8557 5' -45.2 NC_002169.1 + 84422 0.69 0.999118
Target:  5'- aGGAUGcGAGUucAGGAUCGaaUGUACUAc -3'
miRNA:   3'- aCCUGCuUUCGu-UUCUAGU--ACAUGAU- -5'
8557 5' -45.2 NC_002169.1 + 1188 0.69 0.999038
Target:  5'- cGGGCGAGAGCGGAGuuuuacguuuuaAUCuuuccuuuaguucUGUACUAa -3'
miRNA:   3'- aCCUGCUUUCGUUUC------------UAGu------------ACAUGAU- -5'
8557 5' -45.2 NC_002169.1 + 129820 0.7 0.998009
Target:  5'- cUGaACGAAcGCGacGAGAUCGUGUGCa- -3'
miRNA:   3'- -ACcUGCUUuCGU--UUCUAGUACAUGau -5'
8557 5' -45.2 NC_002169.1 + 74485 0.71 0.993362
Target:  5'- uUGGACGAAuGCAAg---CAUGUGCUc -3'
miRNA:   3'- -ACCUGCUUuCGUUucuaGUACAUGAu -5'
8557 5' -45.2 NC_002169.1 + 10677 0.73 0.98019
Target:  5'- -cGAUGAAAGCAAAGAUCGuUGUGg-- -3'
miRNA:   3'- acCUGCUUUCGUUUCUAGU-ACAUgau -5'
8557 5' -45.2 NC_002169.1 + 10551 0.74 0.968814
Target:  5'- -aGAUGAAAGCAAAcAUUGUGUACUAa -3'
miRNA:   3'- acCUGCUUUCGUUUcUAGUACAUGAU- -5'
8557 5' -45.2 NC_002169.1 + 105353 0.75 0.948886
Target:  5'- uUGGAUGAAAGCAAAcAUgAUGUACc- -3'
miRNA:   3'- -ACCUGCUUUCGUUUcUAgUACAUGau -5'
8557 5' -45.2 NC_002169.1 + 10971 0.78 0.85538
Target:  5'- -cGACGAAA-CAAAGAUCAUGUAUUAa -3'
miRNA:   3'- acCUGCUUUcGUUUCUAGUACAUGAU- -5'
8557 5' -45.2 NC_002169.1 + 11330 0.79 0.828519
Target:  5'- -cGACGAAAGCAAAGAUCGUGcauuuCUGc -3'
miRNA:   3'- acCUGCUUUCGUUUCUAGUACau---GAU- -5'
8557 5' -45.2 NC_002169.1 + 104797 0.8 0.779542
Target:  5'- uUGGACGAAAGCAAAGAUUg---ACUAu -3'
miRNA:   3'- -ACCUGCUUUCGUUUCUAGuacaUGAU- -5'
8557 5' -45.2 NC_002169.1 + 52823 0.8 0.75874
Target:  5'- -cGAUGAAAGCAAAcAUCGUGUACUAa -3'
miRNA:   3'- acCUGCUUUCGUUUcUAGUACAUGAU- -5'
8557 5' -45.2 NC_002169.1 + 11476 0.81 0.715594
Target:  5'- -cGAUGAAAGCAAAcAUCAUGUACUAg -3'
miRNA:   3'- acCUGCUUUCGUUUcUAGUACAUGAU- -5'
8557 5' -45.2 NC_002169.1 + 41902 0.81 0.704559
Target:  5'- uUGGACGAAAGCAAA-AUCGaGUACUAa -3'
miRNA:   3'- -ACCUGCUUUCGUUUcUAGUaCAUGAU- -5'
8557 5' -45.2 NC_002169.1 + 119356 0.82 0.682277
Target:  5'- -cGAUaAAAGCAAAGAUCGUGUACUAa -3'
miRNA:   3'- acCUGcUUUCGUUUCUAGUACAUGAU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.