miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8559 5' -47.6 NC_002169.1 + 86368 0.66 0.999616
Target:  5'- cUGUugAGCGAcUGcCACCGUcaauagGAugGCGCa -3'
miRNA:   3'- cACG--UUGCUaAC-GUGGCA------UUugUGCG- -5'
8559 5' -47.6 NC_002169.1 + 133177 0.66 0.999517
Target:  5'- cUGCGcCGucguCGCCGUGGGCAUGUa -3'
miRNA:   3'- cACGUuGCuaacGUGGCAUUUGUGCG- -5'
8559 5' -47.6 NC_002169.1 + 1197 0.66 0.999517
Target:  5'- -aGCAGCG---GCACCG-AGGCACa- -3'
miRNA:   3'- caCGUUGCuaaCGUGGCaUUUGUGcg -5'
8559 5' -47.6 NC_002169.1 + 109001 0.66 0.999506
Target:  5'- gGUGCGcaucaccaacgacACGA-UGCGCCa-AGACAUGCu -3'
miRNA:   3'- -CACGU-------------UGCUaACGUGGcaUUUGUGCG- -5'
8559 5' -47.6 NC_002169.1 + 49692 0.66 0.999506
Target:  5'- -gGCGGCGA---CGCCGUugaucugAAACACGUu -3'
miRNA:   3'- caCGUUGCUaacGUGGCA-------UUUGUGCG- -5'
8559 5' -47.6 NC_002169.1 + 18018 0.66 0.999396
Target:  5'- -cGuCAACGAUuuggGCGCCGcAAACACc- -3'
miRNA:   3'- caC-GUUGCUAa---CGUGGCaUUUGUGcg -5'
8559 5' -47.6 NC_002169.1 + 526 0.66 0.999396
Target:  5'- -gGCGGCGGUUGCcCCGU---CAUGa -3'
miRNA:   3'- caCGUUGCUAACGuGGCAuuuGUGCg -5'
8559 5' -47.6 NC_002169.1 + 42983 0.66 0.999396
Target:  5'- uGUGgaCAGCGAUcgcgGCGCCGccuuuGACuACGCa -3'
miRNA:   3'- -CAC--GUUGCUAa---CGUGGCau---UUG-UGCG- -5'
8559 5' -47.6 NC_002169.1 + 128792 0.66 0.999249
Target:  5'- -aGCcAUGcgUGaCGCUGUAuGCGCGCc -3'
miRNA:   3'- caCGuUGCuaAC-GUGGCAUuUGUGCG- -5'
8559 5' -47.6 NC_002169.1 + 34508 0.66 0.999249
Target:  5'- uUGCGGCGGcgGCGCCGU-----CGCc -3'
miRNA:   3'- cACGUUGCUaaCGUGGCAuuuguGCG- -5'
8559 5' -47.6 NC_002169.1 + 49379 0.66 0.999199
Target:  5'- -cGCAACGAUUGCAagugucuauuguuuUCGUuAAUACa- -3'
miRNA:   3'- caCGUUGCUAACGU--------------GGCAuUUGUGcg -5'
8559 5' -47.6 NC_002169.1 + 44589 0.67 0.999072
Target:  5'- aUGCAACGcaccgUGC-CCGaacUGGAgGCGCa -3'
miRNA:   3'- cACGUUGCua---ACGuGGC---AUUUgUGCG- -5'
8559 5' -47.6 NC_002169.1 + 45817 0.67 0.999053
Target:  5'- -gGCGAUuucaccaGAUUGCucGCCGacucGACACGCg -3'
miRNA:   3'- caCGUUG-------CUAACG--UGGCau--UUGUGCG- -5'
8559 5' -47.6 NC_002169.1 + 24371 0.67 0.999053
Target:  5'- gGUGUAcacguugGCGAUcGCGCCGUcGAuCACGg -3'
miRNA:   3'- -CACGU-------UGCUAaCGUGGCAuUU-GUGCg -5'
8559 5' -47.6 NC_002169.1 + 21855 0.67 0.999013
Target:  5'- uUGCAAUGccucaaaaugccagGCACCGUuuuuAGCGCGUc -3'
miRNA:   3'- cACGUUGCuaa-----------CGUGGCAu---UUGUGCG- -5'
8559 5' -47.6 NC_002169.1 + 46090 0.67 0.998861
Target:  5'- -gGCGGCGGcgGUGCCG--GACgACGCa -3'
miRNA:   3'- caCGUUGCUaaCGUGGCauUUG-UGCG- -5'
8559 5' -47.6 NC_002169.1 + 47158 0.67 0.998611
Target:  5'- -gGCGGCGuugggaGCGCCGUGAuuGCGg -3'
miRNA:   3'- caCGUUGCuaa---CGUGGCAUUugUGCg -5'
8559 5' -47.6 NC_002169.1 + 115033 0.67 0.998611
Target:  5'- -aGCGGCGAcgGCGuccacuUCGUGAAUAUGUa -3'
miRNA:   3'- caCGUUGCUaaCGU------GGCAUUUGUGCG- -5'
8559 5' -47.6 NC_002169.1 + 61160 0.67 0.998315
Target:  5'- -cGC-ACGAauugUUGCugCG-GAGCAUGCa -3'
miRNA:   3'- caCGuUGCU----AACGugGCaUUUGUGCG- -5'
8559 5' -47.6 NC_002169.1 + 95144 0.67 0.998315
Target:  5'- -cGCAuCGAa-GCGCCGUGuuuucAACGCGUc -3'
miRNA:   3'- caCGUuGCUaaCGUGGCAU-----UUGUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.