miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8566 5' -48.5 NC_002169.1 + 131147 0.66 0.999422
Target:  5'- uCGAAU-C-ACAUAAUCGCUGuuGGCGg -3'
miRNA:   3'- -GCUUAuGcUGUGUUGGUGAUggCUGC- -5'
8566 5' -48.5 NC_002169.1 + 37202 0.66 0.999422
Target:  5'- cCGAGaACGACACuuuuGCaACUGCCccgucGACGa -3'
miRNA:   3'- -GCUUaUGCUGUGu---UGgUGAUGG-----CUGC- -5'
8566 5' -48.5 NC_002169.1 + 82708 0.66 0.999422
Target:  5'- aGAAcgcCGcCGCAGCCgcaGCUugCGACGu -3'
miRNA:   3'- gCUUau-GCuGUGUUGG---UGAugGCUGC- -5'
8566 5' -48.5 NC_002169.1 + 37755 0.66 0.999422
Target:  5'- aGAGUGUGGCAuCAGCCccaaguCUACCGcaGCGg -3'
miRNA:   3'- gCUUAUGCUGU-GUUGGu-----GAUGGC--UGC- -5'
8566 5' -48.5 NC_002169.1 + 120749 0.66 0.999397
Target:  5'- aGGAUGa-GCACAGCCACggcagcaaaaCGACGa -3'
miRNA:   3'- gCUUAUgcUGUGUUGGUGaug-------GCUGC- -5'
8566 5' -48.5 NC_002169.1 + 30785 0.66 0.999285
Target:  5'- aCGAGUuuGCGAgACGAgCACauUGCCGAa- -3'
miRNA:   3'- -GCUUA--UGCUgUGUUgGUG--AUGGCUgc -5'
8566 5' -48.5 NC_002169.1 + 124249 0.66 0.999285
Target:  5'- aGAGcgcuCGACGCuAGCgCAgaGCCGACGa -3'
miRNA:   3'- gCUUau--GCUGUG-UUG-GUgaUGGCUGC- -5'
8566 5' -48.5 NC_002169.1 + 56145 0.66 0.999285
Target:  5'- ---uUACGACgACGACgACUAC-GACGa -3'
miRNA:   3'- gcuuAUGCUG-UGUUGgUGAUGgCUGC- -5'
8566 5' -48.5 NC_002169.1 + 26191 0.66 0.99912
Target:  5'- aGAugGCaGCGCAACgACgucGCCGGCGa -3'
miRNA:   3'- gCUuaUGcUGUGUUGgUGa--UGGCUGC- -5'
8566 5' -48.5 NC_002169.1 + 66910 0.66 0.99912
Target:  5'- uCGAcgACGGCGCuguCCAUUACCu--- -3'
miRNA:   3'- -GCUuaUGCUGUGuu-GGUGAUGGcugc -5'
8566 5' -48.5 NC_002169.1 + 133717 0.66 0.99912
Target:  5'- aGAucauCGACGuCAACCACUAuCCcACGg -3'
miRNA:   3'- gCUuau-GCUGU-GUUGGUGAU-GGcUGC- -5'
8566 5' -48.5 NC_002169.1 + 111637 0.66 0.999101
Target:  5'- uCGAAUuugcuaaACGACGCGAUCGCaa-CGGCa -3'
miRNA:   3'- -GCUUA-------UGCUGUGUUGGUGaugGCUGc -5'
8566 5' -48.5 NC_002169.1 + 2836 0.66 0.998944
Target:  5'- gGAcgACGAUACGACUACcauuuugauugguggGCCGuCGg -3'
miRNA:   3'- gCUuaUGCUGUGUUGGUGa--------------UGGCuGC- -5'
8566 5' -48.5 NC_002169.1 + 36931 0.66 0.998923
Target:  5'- --cGUGCGAgGuCGGCUACgugGCCGACu -3'
miRNA:   3'- gcuUAUGCUgU-GUUGGUGa--UGGCUGc -5'
8566 5' -48.5 NC_002169.1 + 33115 0.66 0.998923
Target:  5'- uGAcgACGACgACGACgACga-CGACGa -3'
miRNA:   3'- gCUuaUGCUG-UGUUGgUGaugGCUGC- -5'
8566 5' -48.5 NC_002169.1 + 126616 0.67 0.99869
Target:  5'- aCGAuaGCGAUuuCGACaCACUGUCGACGa -3'
miRNA:   3'- -GCUuaUGCUGu-GUUG-GUGAUGGCUGC- -5'
8566 5' -48.5 NC_002169.1 + 15817 0.67 0.99869
Target:  5'- ----gACGACAgcgucgucgUGACCGCcGCCGACGc -3'
miRNA:   3'- gcuuaUGCUGU---------GUUGGUGaUGGCUGC- -5'
8566 5' -48.5 NC_002169.1 + 118820 0.67 0.99869
Target:  5'- -cGAUACGACgACGACgACga-CGACGa -3'
miRNA:   3'- gcUUAUGCUG-UGUUGgUGaugGCUGC- -5'
8566 5' -48.5 NC_002169.1 + 4688 0.67 0.998415
Target:  5'- aCGAcgACGACgACGA-CGCUAauaaCGACGa -3'
miRNA:   3'- -GCUuaUGCUG-UGUUgGUGAUg---GCUGC- -5'
8566 5' -48.5 NC_002169.1 + 49151 0.67 0.998415
Target:  5'- aCGAcgACGACgACGACgAUggcGCCGAUa -3'
miRNA:   3'- -GCUuaUGCUG-UGUUGgUGa--UGGCUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.