miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8568 5' -45.2 NC_002169.1 + 103992 0.66 0.999989
Target:  5'- cUCGGUGAcGGCGacGAGAccaUCGUccGCGAu -3'
miRNA:   3'- -AGCUACUuUCGU--UUCU---AGUAcaCGCU- -5'
8568 5' -45.2 NC_002169.1 + 93450 0.66 0.999984
Target:  5'- gUCGAUGAAGGUcugcagUAUGUGCa- -3'
miRNA:   3'- -AGCUACUUUCGuuucuaGUACACGcu -5'
8568 5' -45.2 NC_002169.1 + 64392 0.66 0.999978
Target:  5'- aCGAauUGaAAAGCAAAGGUUgcGUGCu- -3'
miRNA:   3'- aGCU--AC-UUUCGUUUCUAGuaCACGcu -5'
8568 5' -45.2 NC_002169.1 + 9601 0.66 0.999978
Target:  5'- aCGAUGggGGUAAuGAaaaauucaaagUCGUGUGUc- -3'
miRNA:   3'- aGCUACuuUCGUUuCU-----------AGUACACGcu -5'
8568 5' -45.2 NC_002169.1 + 21692 0.66 0.999978
Target:  5'- aCGGUGccuGGCAguuuuGAGGcauugcaacguUCGUGUGCGGg -3'
miRNA:   3'- aGCUACuu-UCGU-----UUCU-----------AGUACACGCU- -5'
8568 5' -45.2 NC_002169.1 + 129076 0.66 0.99997
Target:  5'- gUCGca-GucGUAGGGAUCcgGUGCGAg -3'
miRNA:   3'- -AGCuacUuuCGUUUCUAGuaCACGCU- -5'
8568 5' -45.2 NC_002169.1 + 105376 0.66 0.99997
Target:  5'- gUCGAcGAucuuggacaaAAGCAAAGAUCGUGUa--- -3'
miRNA:   3'- -AGCUaCU----------UUCGUUUCUAGUACAcgcu -5'
8568 5' -45.2 NC_002169.1 + 12107 0.67 0.999945
Target:  5'- --aAUGcAAGCGAuacAGAaCAUGUGCGAa -3'
miRNA:   3'- agcUACuUUCGUU---UCUaGUACACGCU- -5'
8568 5' -45.2 NC_002169.1 + 42222 0.68 0.999638
Target:  5'- -gGAcGAAAGCAAAGAUUGUGUuuGGa -3'
miRNA:   3'- agCUaCUUUCGUUUCUAGUACAcgCU- -5'
8568 5' -45.2 NC_002169.1 + 42291 0.7 0.998642
Target:  5'- -gGAcGAAAGCAAAGAUUGUGUuuGAc -3'
miRNA:   3'- agCUaCUUUCGUUUCUAGUACAcgCU- -5'
8568 5' -45.2 NC_002169.1 + 105130 0.71 0.997108
Target:  5'- ----cGAAAGCAAAGAUCAUGUacuaGAg -3'
miRNA:   3'- agcuaCUUUCGUUUCUAGUACAcg--CU- -5'
8568 5' -45.2 NC_002169.1 + 129825 0.71 0.997108
Target:  5'- uUCGAcUGAAcgaacGCGacGAGAUCGUGUGCa- -3'
miRNA:   3'- -AGCU-ACUUu----CGU--UUCUAGUACACGcu -5'
8568 5' -45.2 NC_002169.1 + 11604 0.72 0.992332
Target:  5'- -gGAcGAAAGCAAAGAUCGUGUa--- -3'
miRNA:   3'- agCUaCUUUCGUUUCUAGUACAcgcu -5'
8568 5' -45.2 NC_002169.1 + 120199 0.72 0.992332
Target:  5'- -gGAcGAAAGCAAAGAUCGUGUa--- -3'
miRNA:   3'- agCUaCUUUCGUUUCUAGUACAcgcu -5'
8568 5' -45.2 NC_002169.1 + 119580 0.72 0.992332
Target:  5'- -gGAcGAAAGCAAAGAUCGUGUa--- -3'
miRNA:   3'- agCUaCUUUCGUUUCUAGUACAcgcu -5'
8568 5' -45.2 NC_002169.1 + 119635 0.72 0.992332
Target:  5'- -gGAcGAAAGCAAAGAUCGUGUa--- -3'
miRNA:   3'- agCUaCUUUCGUUUCUAGUACAcgcu -5'
8568 5' -45.2 NC_002169.1 + 42032 0.72 0.992332
Target:  5'- -gGAcGAAAGCAAAGAUCGUGUa--- -3'
miRNA:   3'- agCUaCUUUCGUUUCUAGUACAcgcu -5'
8568 5' -45.2 NC_002169.1 + 11096 0.72 0.990336
Target:  5'- -gGAcGAAAGCAAAGAUCGUGUaccaaaguuuguauuGCGu -3'
miRNA:   3'- agCUaCUUUCGUUUCUAGUACA---------------CGCu -5'
8568 5' -45.2 NC_002169.1 + 11204 0.73 0.986603
Target:  5'- -gGAcGAAAGCAAAGAUCAUGUa--- -3'
miRNA:   3'- agCUaCUUUCGUUUCUAGUACAcgcu -5'
8568 5' -45.2 NC_002169.1 + 71670 0.73 0.986603
Target:  5'- -gGAcGAAAGCAAAGAUCAUGUacuaGAa -3'
miRNA:   3'- agCUaCUUUCGUUUCUAGUACAcg--CU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.