miRNA display CGI


Results 1 - 20 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8569 5' -45.8 NC_002169.1 + 49163 0.66 0.999968
Target:  5'- aCGACGAuGGCGccGAuaccgauaUUGUGUACa- -3'
miRNA:   3'- aGCUGCUuUCGUuuCU--------AGCACAUGau -5'
8569 5' -45.8 NC_002169.1 + 97066 0.66 0.999968
Target:  5'- aUCGACGAuc-CGAAcGUUGUGUACa- -3'
miRNA:   3'- -AGCUGCUuucGUUUcUAGCACAUGau -5'
8569 5' -45.8 NC_002169.1 + 70186 0.66 0.999956
Target:  5'- gUCGACGAGGGCAAcaaGUCG-GUGg-- -3'
miRNA:   3'- -AGCUGCUUUCGUUuc-UAGCaCAUgau -5'
8569 5' -45.8 NC_002169.1 + 32962 0.66 0.999941
Target:  5'- uUCGACGAAAcgacGCAAAucGGUCaGcGUACUAg -3'
miRNA:   3'- -AGCUGCUUU----CGUUU--CUAG-CaCAUGAU- -5'
8569 5' -45.8 NC_002169.1 + 36267 0.67 0.999862
Target:  5'- aUCGACGcgauacuGCAAAGAcaGUGUGCg- -3'
miRNA:   3'- -AGCUGCuuu----CGUUUCUagCACAUGau -5'
8569 5' -45.8 NC_002169.1 + 37425 0.67 0.999859
Target:  5'- cCGACGAAGGCcucaccaucgucgGccGAUCGcUGUACa- -3'
miRNA:   3'- aGCUGCUUUCG-------------UuuCUAGC-ACAUGau -5'
8569 5' -45.8 NC_002169.1 + 41105 0.68 0.99962
Target:  5'- cUGACGAuAGUgcGGAUCG-GUGCUc -3'
miRNA:   3'- aGCUGCUuUCGuuUCUAGCaCAUGAu -5'
8569 5' -45.8 NC_002169.1 + 127910 0.68 0.99962
Target:  5'- gCGGCGAagAAGCAuugaaGGGAUCGUGgugaUGCg- -3'
miRNA:   3'- aGCUGCU--UUCGU-----UUCUAGCAC----AUGau -5'
8569 5' -45.8 NC_002169.1 + 4197 0.68 0.99962
Target:  5'- gCGGCGGAGGCGAAGGacuuggugaUgGUGUAa-- -3'
miRNA:   3'- aGCUGCUUUCGUUUCU---------AgCACAUgau -5'
8569 5' -45.8 NC_002169.1 + 99937 0.68 0.999397
Target:  5'- aUUGACGcGAGGCGGcgcAGGUCGUgGUAUUGa -3'
miRNA:   3'- -AGCUGC-UUUCGUU---UCUAGCA-CAUGAU- -5'
8569 5' -45.8 NC_002169.1 + 43984 0.69 0.998292
Target:  5'- gUCGuCGAAAGUAAAGA-CGUGcACg- -3'
miRNA:   3'- -AGCuGCUUUCGUUUCUaGCACaUGau -5'
8569 5' -45.8 NC_002169.1 + 53494 0.7 0.99582
Target:  5'- aUCGACGggGGUguGGAGAUCGUa----- -3'
miRNA:   3'- -AGCUGCuuUCG--UUUCUAGCAcaugau -5'
8569 5' -45.8 NC_002169.1 + 26639 0.72 0.986422
Target:  5'- cUCGGCGAGGGCAAA-AggGUGUACg- -3'
miRNA:   3'- -AGCUGCUUUCGUUUcUagCACAUGau -5'
8569 5' -45.8 NC_002169.1 + 37283 0.72 0.982521
Target:  5'- aUCGACG-GAGCAGGGAUCGaUG-ACg- -3'
miRNA:   3'- -AGCUGCuUUCGUUUCUAGC-ACaUGau -5'
8569 5' -45.8 NC_002169.1 + 104799 0.73 0.97783
Target:  5'- -gGACGAAAGCAAAGAUUG---ACUAu -3'
miRNA:   3'- agCUGCUUUCGUUUCUAGCacaUGAU- -5'
8569 5' -45.8 NC_002169.1 + 129825 0.73 0.97783
Target:  5'- uUCGAcugaaCGAAcGCGacGAGAUCGUGUGCa- -3'
miRNA:   3'- -AGCU-----GCUUuCGU--UUCUAGCACAUGau -5'
8569 5' -45.8 NC_002169.1 + 41904 0.75 0.949701
Target:  5'- -gGACGAAAGCAAA-AUCGaGUACUAa -3'
miRNA:   3'- agCUGCUUUCGUUUcUAGCaCAUGAU- -5'
8569 5' -45.8 NC_002169.1 + 118888 0.75 0.945011
Target:  5'- aUCGAUGAGAGCcuguAGAUCGgccgugaauuguUGUGCUGa -3'
miRNA:   3'- -AGCUGCUUUCGuu--UCUAGC------------ACAUGAU- -5'
8569 5' -45.8 NC_002169.1 + 10969 0.76 0.910977
Target:  5'- uUCGACGAAA-CAAAGAUCaUGUAUUAa -3'
miRNA:   3'- -AGCUGCUUUcGUUUCUAGcACAUGAU- -5'
8569 5' -45.8 NC_002169.1 + 53060 0.78 0.832549
Target:  5'- -gGAUGAAAGCAAAGAUgaUGUACUAa -3'
miRNA:   3'- agCUGCUUUCGUUUCUAgcACAUGAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.