miRNA display CGI


Results 1 - 20 of 63 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8570 3' -45.7 NC_002169.1 + 11571 0.66 0.999939
Target:  5'- uGCGGaaacuugaACACcAUCUUUGUUUUUGUCa -3'
miRNA:   3'- gUGUCa-------UGUGcUAGAAACGAAAGCAG- -5'
8570 3' -45.7 NC_002169.1 + 10711 0.67 0.999857
Target:  5'- -uUAGUACACaAUgUUUGCUUucaucuacgaUCGUCg -3'
miRNA:   3'- guGUCAUGUGcUAgAAACGAA----------AGCAG- -5'
8570 3' -45.7 NC_002169.1 + 108377 0.68 0.999608
Target:  5'- aACuGUGC-CGAUU--UGUUUUCGUCg -3'
miRNA:   3'- gUGuCAUGuGCUAGaaACGAAAGCAG- -5'
8570 3' -45.7 NC_002169.1 + 31415 0.68 0.999379
Target:  5'- gGC-GUGCACGAUCUcgucgaUGgUUUUGUCg -3'
miRNA:   3'- gUGuCAUGUGCUAGAa-----ACgAAAGCAG- -5'
8570 3' -45.7 NC_002169.1 + 10519 0.7 0.996381
Target:  5'- cCACA----ACGAUCUUUGCUUUCaUCg -3'
miRNA:   3'- -GUGUcaugUGCUAGAAACGAAAGcAG- -5'
8570 3' -45.7 NC_002169.1 + 52900 0.71 0.993125
Target:  5'- -uUAGUACAUcAUCUUUGCUUUCaUCc -3'
miRNA:   3'- guGUCAUGUGcUAGAAACGAAAGcAG- -5'
8570 3' -45.7 NC_002169.1 + 105145 0.71 0.993125
Target:  5'- -----cACAUGAUCUUUGCUUUCaUCg -3'
miRNA:   3'- gugucaUGUGCUAGAAACGAAAGcAG- -5'
8570 3' -45.7 NC_002169.1 + 42378 0.73 0.982195
Target:  5'- -----aACACaAUCUUUGCUUUCGUCc -3'
miRNA:   3'- gugucaUGUGcUAGAAACGAAAGCAG- -5'
8570 3' -45.7 NC_002169.1 + 104958 0.73 0.971803
Target:  5'- uCAUAGU-CA--AUCUUUGCUUUCGUCc -3'
miRNA:   3'- -GUGUCAuGUgcUAGAAACGAAAGCAG- -5'
8570 3' -45.7 NC_002169.1 + 42453 0.75 0.944237
Target:  5'- --aAGUcaaACACaAUCUUUGCUUUCGUCc -3'
miRNA:   3'- gugUCA---UGUGcUAGAAACGAAAGCAG- -5'
8570 3' -45.7 NC_002169.1 + 105322 0.76 0.922478
Target:  5'- --aAGUACACaAUgUUUGCUUUCGUCc -3'
miRNA:   3'- gugUCAUGUGcUAgAAACGAAAGCAG- -5'
8570 3' -45.7 NC_002169.1 + 11636 0.76 0.922478
Target:  5'- -cUAGUACAUGAUgUUUGCUUUCaUCg -3'
miRNA:   3'- guGUCAUGUGCUAgAAACGAAAGcAG- -5'
8570 3' -45.7 NC_002169.1 + 105401 0.76 0.922478
Target:  5'- aCGCAacuuuaaUACACGAUCUUUGCUUUCaUCc -3'
miRNA:   3'- -GUGUc------AUGUGCUAGAAACGAAAGcAG- -5'
8570 3' -45.7 NC_002169.1 + 105690 0.76 0.916331
Target:  5'- ----aUACACGAUCUUUGCUUUC-UCg -3'
miRNA:   3'- gugucAUGUGCUAGAAACGAAAGcAG- -5'
8570 3' -45.7 NC_002169.1 + 52976 0.76 0.916331
Target:  5'- -uUAGUACACcAUCUUUGCUUUCaUCg -3'
miRNA:   3'- guGUCAUGUGcUAGAAACGAAAGcAG- -5'
8570 3' -45.7 NC_002169.1 + 105600 0.77 0.888948
Target:  5'- ----aUACACaAUCUUUGCUUUCGUCg -3'
miRNA:   3'- gugucAUGUGcUAGAAACGAAAGCAG- -5'
8570 3' -45.7 NC_002169.1 + 41873 0.77 0.873631
Target:  5'- ----aUACACGAUCUUUGCUUUCaUCg -3'
miRNA:   3'- gugucAUGUGCUAGAAACGAAAGcAG- -5'
8570 3' -45.7 NC_002169.1 + 41766 0.78 0.865584
Target:  5'- uGCuccaUACuCGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- gUGuc--AUGuGCUAGAAACGAAAGCAG- -5'
8570 3' -45.7 NC_002169.1 + 11570 0.78 0.830988
Target:  5'- -cUAGUACuCGAUCUUUGCUUUCaUCg -3'
miRNA:   3'- guGUCAUGuGCUAGAAACGAAAGcAG- -5'
8570 3' -45.7 NC_002169.1 + 52664 0.8 0.762615
Target:  5'- -uUAGUACACGAUgUUUGCUUUCaUCg -3'
miRNA:   3'- guGUCAUGUGCUAgAAACGAAAGcAG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.