miRNA display CGI


Results 1 - 20 of 82 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8572 5' -43.5 NC_002169.1 + 120058 0.66 1
Target:  5'- aCGACGAAgugGGCAuacgugugGAGAUCGUa----- -3'
miRNA:   3'- aGCUGCUU---UCGU--------UUCUAGCAcauaau -5'
8572 5' -43.5 NC_002169.1 + 41904 0.66 1
Target:  5'- -gGACGAAAGCAAA-AUCGaGUAc-- -3'
miRNA:   3'- agCUGCUUUCGUUUcUAGCaCAUaau -5'
8572 5' -43.5 NC_002169.1 + 134956 0.66 0.999999
Target:  5'- gUCGcCGAGAGCGGAGAcauugguuUCGauaaaaucaaauUGUAUUGc -3'
miRNA:   3'- -AGCuGCUUUCGUUUCU--------AGC------------ACAUAAU- -5'
8572 5' -43.5 NC_002169.1 + 53559 0.66 0.999999
Target:  5'- cUCGGCGgcAGCu-GGAUCGcaaucucgGUGUUGa -3'
miRNA:   3'- -AGCUGCuuUCGuuUCUAGCa-------CAUAAU- -5'
8572 5' -43.5 NC_002169.1 + 5686 0.66 0.999999
Target:  5'- cUUGACGAGcaguAGCAcuugacugaacgccAAGAUCGuUGUAUg- -3'
miRNA:   3'- -AGCUGCUU----UCGU--------------UUCUAGC-ACAUAau -5'
8572 5' -43.5 NC_002169.1 + 25103 0.66 0.999999
Target:  5'- gCGGCGAGAGUGugucAGAUCGUcucGUGg-- -3'
miRNA:   3'- aGCUGCUUUCGUu---UCUAGCA---CAUaau -5'
8572 5' -43.5 NC_002169.1 + 25796 0.67 0.999998
Target:  5'- -aGGCGAGccGGCAugcGGGAUCGgGUAUUu -3'
miRNA:   3'- agCUGCUU--UCGU---UUCUAGCaCAUAAu -5'
8572 5' -43.5 NC_002169.1 + 9601 0.67 0.999997
Target:  5'- aCGAUGggGGUAAuGAaaaauucaaagUCGUGUGUc- -3'
miRNA:   3'- aGCUGCuuUCGUUuCU-----------AGCACAUAau -5'
8572 5' -43.5 NC_002169.1 + 49559 0.67 0.999996
Target:  5'- aUGGCGggGGCAAuguAGAcgugaaUCGUGUcgAUUGc -3'
miRNA:   3'- aGCUGCuuUCGUU---UCU------AGCACA--UAAU- -5'
8572 5' -43.5 NC_002169.1 + 77692 0.68 0.999992
Target:  5'- aCGGCGAAAaC-AAGAUUGUGUcgUGu -3'
miRNA:   3'- aGCUGCUUUcGuUUCUAGCACAuaAU- -5'
8572 5' -43.5 NC_002169.1 + 43984 0.68 0.999984
Target:  5'- gUCGuCGAAAGUAAAGA-CGUGc---- -3'
miRNA:   3'- -AGCuGCUUUCGUUUCUaGCACauaau -5'
8572 5' -43.5 NC_002169.1 + 26639 0.68 0.999977
Target:  5'- cUCGGCGAGGGCAAA-AggGUGUAc-- -3'
miRNA:   3'- -AGCUGCUUUCGUUUcUagCACAUaau -5'
8572 5' -43.5 NC_002169.1 + 129825 0.68 0.999969
Target:  5'- uUCGAcugaaCGAAcGCGacGAGAUCGUGUGc-- -3'
miRNA:   3'- -AGCU-----GCUUuCGU--UUCUAGCACAUaau -5'
8572 5' -43.5 NC_002169.1 + 53060 0.7 0.999862
Target:  5'- -gGAUGAAAGCAAAGAUgaUGUAc-- -3'
miRNA:   3'- agCUGCUUUCGUUUCUAgcACAUaau -5'
8572 5' -43.5 NC_002169.1 + 70186 0.7 0.999862
Target:  5'- gUCGACGAGGGCAAcaaGUCG-GUGg-- -3'
miRNA:   3'- -AGCUGCUUUCGUUuc-UAGCaCAUaau -5'
8572 5' -43.5 NC_002169.1 + 3665 0.7 0.999765
Target:  5'- uUCGACGGAuuguuguuGCAcGGGUgGUGUGUa- -3'
miRNA:   3'- -AGCUGCUUu-------CGUuUCUAgCACAUAau -5'
8572 5' -43.5 NC_002169.1 + 11474 0.71 0.999612
Target:  5'- gUCGAUGAAAGCAAAcAUCaUGUAc-- -3'
miRNA:   3'- -AGCUGCUUUCGUUUcUAGcACAUaau -5'
8572 5' -43.5 NC_002169.1 + 118888 0.71 0.999508
Target:  5'- aUCGAUGAGAGCcuguAGAUCGgccGUGa-- -3'
miRNA:   3'- -AGCUGCUUUCGuu--UCUAGCa--CAUaau -5'
8572 5' -43.5 NC_002169.1 + 127910 0.71 0.999224
Target:  5'- gCGGCGAagAAGCAuugaaGGGAUCGUGg---- -3'
miRNA:   3'- aGCUGCU--UUCGU-----UUCUAGCACauaau -5'
8572 5' -43.5 NC_002169.1 + 4197 0.71 0.999036
Target:  5'- gCGGCGGAGGCGAAGGacuuggugaUgGUGUAa-- -3'
miRNA:   3'- aGCUGCUUUCGUUUCU---------AgCACAUaau -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.