Results 41 - 60 of 384 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8943 | 3' | -55.4 | NC_002512.2 | + | 8345 | 0.75 | 0.552932 |
Target: 5'- cGGGUCCGgcguagcgguaGGCGGGAGCgccgAGGAuccGCGGCg -3' miRNA: 3'- -CCUAGGUg----------UCGUCCUCG----UCCU---UGCCG- -5' |
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8943 | 3' | -55.4 | NC_002512.2 | + | 227605 | 0.74 | 0.662162 |
Target: 5'- ---cCCGCAGCGGccggaGGGCGGGcGGCGGCg -3' miRNA: 3'- ccuaGGUGUCGUC-----CUCGUCC-UUGCCG- -5' |
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8943 | 3' | -55.4 | NC_002512.2 | + | 22981 | 0.74 | 0.642221 |
Target: 5'- ---cCCGCGGCGGGAcGCGGG--CGGCg -3' miRNA: 3'- ccuaGGUGUCGUCCU-CGUCCuuGCCG- -5' |
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8943 | 3' | -55.4 | NC_002512.2 | + | 128196 | 0.74 | 0.642221 |
Target: 5'- cGGG-CCGcCGGCGGGAcCGGGGACGGg -3' miRNA: 3'- -CCUaGGU-GUCGUCCUcGUCCUUGCCg -5' |
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8943 | 3' | -55.4 | NC_002512.2 | + | 119317 | 0.74 | 0.612272 |
Target: 5'- aGAUCCugaccCGGCAGGAccucccgcGCGGGGGCGGa -3' miRNA: 3'- cCUAGGu----GUCGUCCU--------CGUCCUUGCCg -5' |
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8943 | 3' | -55.4 | NC_002512.2 | + | 166451 | 0.74 | 0.662162 |
Target: 5'- gGGggCgACGGCgccgggcucgAGG-GCGGGGACGGCg -3' miRNA: 3'- -CCuaGgUGUCG----------UCCuCGUCCUUGCCG- -5' |
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8943 | 3' | -55.4 | NC_002512.2 | + | 226590 | 0.74 | 0.642221 |
Target: 5'- aGGAgggCGCGGCccGGGGGaggaGGGGACGGCg -3' miRNA: 3'- -CCUag-GUGUCG--UCCUCg---UCCUUGCCG- -5' |
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8943 | 3' | -55.4 | NC_002512.2 | + | 56520 | 0.74 | 0.652199 |
Target: 5'- aGGUCCGCgaggAGCacGGGAGCAGGAcguccaGGCg -3' miRNA: 3'- cCUAGGUG----UCG--UCCUCGUCCUug----CCG- -5' |
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8943 | 3' | -55.4 | NC_002512.2 | + | 81979 | 0.74 | 0.612272 |
Target: 5'- cGGGUggUgGCGGCGGGGGCgucucGGGGGCGGUc -3' miRNA: 3'- -CCUA--GgUGUCGUCCUCG-----UCCUUGCCG- -5' |
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8943 | 3' | -55.4 | NC_002512.2 | + | 143995 | 0.73 | 0.701701 |
Target: 5'- cGAUCUcgGCGGCGGuGcgcaGGUGGGGACGGCa -3' miRNA: 3'- cCUAGG--UGUCGUC-C----UCGUCCUUGCCG- -5' |
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8943 | 3' | -55.4 | NC_002512.2 | + | 152850 | 0.73 | 0.710494 |
Target: 5'- cGGUCCccaggcggaacguGCAGCcGGuguGCGGGAGCGGUc -3' miRNA: 3'- cCUAGG-------------UGUCGuCCu--CGUCCUUGCCG- -5' |
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8943 | 3' | -55.4 | NC_002512.2 | + | 164624 | 0.73 | 0.711467 |
Target: 5'- aGGAUCUcgaggaguccggACGGCAGGcGGCGaucGGggUGGCu -3' miRNA: 3'- -CCUAGG------------UGUCGUCC-UCGU---CCuuGCCG- -5' |
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8943 | 3' | -55.4 | NC_002512.2 | + | 173619 | 0.73 | 0.711467 |
Target: 5'- gGGAgcgccuccgCCGCGGCGGcgaaccccGGGuCGGGGGCGGCg -3' miRNA: 3'- -CCUa--------GGUGUCGUC--------CUC-GUCCUUGCCG- -5' |
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8943 | 3' | -55.4 | NC_002512.2 | + | 149502 | 0.73 | 0.672101 |
Target: 5'- cGGGUggucaaaaggCCGCGGCcGGAGCGGGc-CGGCc -3' miRNA: 3'- -CCUA----------GGUGUCGuCCUCGUCCuuGCCG- -5' |
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8943 | 3' | -55.4 | NC_002512.2 | + | 85815 | 0.73 | 0.68201 |
Target: 5'- ---aCCACAuCAGGGGacagaaAGGAACGGCg -3' miRNA: 3'- ccuaGGUGUcGUCCUCg-----UCCUUGCCG- -5' |
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8943 | 3' | -55.4 | NC_002512.2 | + | 170821 | 0.73 | 0.68201 |
Target: 5'- gGGggCgGCAGCGGcGGCAGcGGCGGCg -3' miRNA: 3'- -CCuaGgUGUCGUCcUCGUCcUUGCCG- -5' |
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8943 | 3' | -55.4 | NC_002512.2 | + | 84621 | 0.73 | 0.691879 |
Target: 5'- -cAUCCGCAGCAGGucgucgucCAGGcGGCGGCc -3' miRNA: 3'- ccUAGGUGUCGUCCuc------GUCC-UUGCCG- -5' |
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8943 | 3' | -55.4 | NC_002512.2 | + | 110263 | 0.73 | 0.672101 |
Target: 5'- aGcgCCGC-GCuGGGGCGGGAggcgaGCGGCg -3' miRNA: 3'- cCuaGGUGuCGuCCUCGUCCU-----UGCCG- -5' |
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8943 | 3' | -55.4 | NC_002512.2 | + | 152911 | 0.73 | 0.68201 |
Target: 5'- cGGUCCcCGGUcGGucAGCGGGAGCGGUc -3' miRNA: 3'- cCUAGGuGUCGuCC--UCGUCCUUGCCG- -5' |
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8943 | 3' | -55.4 | NC_002512.2 | + | 54250 | 0.73 | 0.68201 |
Target: 5'- -cGUCCGCAGC---GGCAGGGcgGCGGCg -3' miRNA: 3'- ccUAGGUGUCGuccUCGUCCU--UGCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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