miRNA display CGI


Results 21 - 40 of 384 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8943 3' -55.4 NC_002512.2 + 207842 0.66 0.963218
Target:  5'- cGAUCC-CGGCgcauccucuuaaAGGAcGCcagcgaguccGGGGACGGCu -3'
miRNA:   3'- cCUAGGuGUCG------------UCCU-CG----------UCCUUGCCG- -5'
8943 3' -55.4 NC_002512.2 + 153177 0.66 0.963218
Target:  5'- cGGG---GCGGCGGGcAGCggugGGGAggGCGGCa -3'
miRNA:   3'- -CCUaggUGUCGUCC-UCG----UCCU--UGCCG- -5'
8943 3' -55.4 NC_002512.2 + 227236 0.66 0.966413
Target:  5'- gGGAggCGCGGCGGacGGGCGGGcaucagGACGaGCg -3'
miRNA:   3'- -CCUagGUGUCGUC--CUCGUCC------UUGC-CG- -5'
8943 3' -55.4 NC_002512.2 + 49432 0.66 0.972207
Target:  5'- ---aCCACAuccCAGGGGCGGGgugaaaGugGGCu -3'
miRNA:   3'- ccuaGGUGUc--GUCCUCGUCC------UugCCG- -5'
8943 3' -55.4 NC_002512.2 + 160768 0.67 0.952377
Target:  5'- cGGAggucCCGgAGCGGGgccggcgcagcAGCAGccACGGCa -3'
miRNA:   3'- -CCUa---GGUgUCGUCC-----------UCGUCcuUGCCG- -5'
8943 3' -55.4 NC_002512.2 + 96606 0.66 0.959816
Target:  5'- gGGA-CCGgAGCGcGGAGacgcgGGGGAgGGCg -3'
miRNA:   3'- -CCUaGGUgUCGU-CCUCg----UCCUUgCCG- -5'
8943 3' -55.4 NC_002512.2 + 136110 0.66 0.966413
Target:  5'- cGGcggCCACAGCgacggggaGGGAGaAGGGAaaagaGGCg -3'
miRNA:   3'- -CCua-GGUGUCG--------UCCUCgUCCUUg----CCG- -5'
8943 3' -55.4 NC_002512.2 + 92532 0.66 0.972207
Target:  5'- cGGAUCUACccGGCcGcGGCGGccGCGGCg -3'
miRNA:   3'- -CCUAGGUG--UCGuCcUCGUCcuUGCCG- -5'
8943 3' -55.4 NC_002512.2 + 126907 0.66 0.959816
Target:  5'- --cUCuCGCGGCGGGGGgAGGccgGGCuGGCg -3'
miRNA:   3'- ccuAG-GUGUCGUCCUCgUCC---UUG-CCG- -5'
8943 3' -55.4 NC_002512.2 + 118907 0.66 0.972207
Target:  5'- gGGGcCCGCGcuGUGGGAGaagGGGGACGuGCu -3'
miRNA:   3'- -CCUaGGUGU--CGUCCUCg--UCCUUGC-CG- -5'
8943 3' -55.4 NC_002512.2 + 142170 0.66 0.96516
Target:  5'- cGGUCacgacaCACGGCGGGAGaAGGAuccggggucguguCGGCg -3'
miRNA:   3'- cCUAG------GUGUCGUCCUCgUCCUu------------GCCG- -5'
8943 3' -55.4 NC_002512.2 + 168097 0.66 0.959816
Target:  5'- gGGAggaUACGuGCGGGAGCAGGGuaGGa -3'
miRNA:   3'- -CCUag-GUGU-CGUCCUCGUCCUugCCg -5'
8943 3' -55.4 NC_002512.2 + 103699 0.66 0.966413
Target:  5'- cGGA--CGCGGCGGGAGgGGGcGCcGCc -3'
miRNA:   3'- -CCUagGUGUCGUCCUCgUCCuUGcCG- -5'
8943 3' -55.4 NC_002512.2 + 192479 0.66 0.966413
Target:  5'- cGGAUCgAC-GCGcGGA-CGGGGACGcGCu -3'
miRNA:   3'- -CCUAGgUGuCGU-CCUcGUCCUUGC-CG- -5'
8943 3' -55.4 NC_002512.2 + 132450 0.66 0.969408
Target:  5'- --cUCCcCGGCGGcGGGUccgGGGAGCGcGCg -3'
miRNA:   3'- ccuAGGuGUCGUC-CUCG---UCCUUGC-CG- -5'
8943 3' -55.4 NC_002512.2 + 215614 0.66 0.971936
Target:  5'- cGGGUCUGCGGCAGcguggccGAGCucuucgccguGGGGCuGCg -3'
miRNA:   3'- -CCUAGGUGUCGUC-------CUCGu---------CCUUGcCG- -5'
8943 3' -55.4 NC_002512.2 + 195013 0.67 0.944064
Target:  5'- cGGUCC-CGGCGGcGGCGacGACGGCg -3'
miRNA:   3'- cCUAGGuGUCGUCcUCGUccUUGCCG- -5'
8943 3' -55.4 NC_002512.2 + 131864 0.67 0.948331
Target:  5'- uGAcgCCGCGGC-GGAuCAGG-ACGGCc -3'
miRNA:   3'- cCUa-GGUGUCGuCCUcGUCCuUGCCG- -5'
8943 3' -55.4 NC_002512.2 + 98162 0.66 0.956204
Target:  5'- cGGucgCCGCGGUcuGGA-CGGGcGCGGCg -3'
miRNA:   3'- -CCua-GGUGUCGu-CCUcGUCCuUGCCG- -5'
8943 3' -55.4 NC_002512.2 + 169069 0.66 0.956204
Target:  5'- gGGGcUCCGCGGCGGcGGCGuc-GCGGCc -3'
miRNA:   3'- -CCU-AGGUGUCGUCcUCGUccuUGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.