miRNA display CGI


Results 1 - 20 of 384 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8943 3' -55.4 NC_002512.2 + 174767 0.66 0.972207
Target:  5'- aGGAccgcguccgucUCCGCGaacucgucCAGGAGCAGGggUuggaccuucuGGCg -3'
miRNA:   3'- -CCU-----------AGGUGUc-------GUCCUCGUCCuuG----------CCG- -5'
8943 3' -55.4 NC_002512.2 + 136110 0.66 0.966413
Target:  5'- cGGcggCCACAGCgacggggaGGGAGaAGGGAaaagaGGCg -3'
miRNA:   3'- -CCua-GGUGUCG--------UCCUCgUCCUUg----CCG- -5'
8943 3' -55.4 NC_002512.2 + 153177 0.66 0.963218
Target:  5'- cGGG---GCGGCGGGcAGCggugGGGAggGCGGCa -3'
miRNA:   3'- -CCUaggUGUCGUCC-UCG----UCCU--UGCCG- -5'
8943 3' -55.4 NC_002512.2 + 227149 1.15 0.002223
Target:  5'- aGGAUCCACAGCAGGAGCAGGAACGGCa -3'
miRNA:   3'- -CCUAGGUGUCGUCCUCGUCCUUGCCG- -5'
8943 3' -55.4 NC_002512.2 + 215614 0.66 0.971936
Target:  5'- cGGGUCUGCGGCAGcguggccGAGCucuucgccguGGGGCuGCg -3'
miRNA:   3'- -CCUAGGUGUCGUC-------CUCGu---------CCUUGcCG- -5'
8943 3' -55.4 NC_002512.2 + 160891 0.66 0.970551
Target:  5'- aGGGUUCgggaagcgggGCGGCcGGGGCAaGGGacgcggacagucgcuGCGGCg -3'
miRNA:   3'- -CCUAGG----------UGUCGuCCUCGU-CCU---------------UGCCG- -5'
8943 3' -55.4 NC_002512.2 + 132450 0.66 0.969408
Target:  5'- --cUCCcCGGCGGcGGGUccgGGGAGCGcGCg -3'
miRNA:   3'- ccuAGGuGUCGUC-CUCG---UCCUUGC-CG- -5'
8943 3' -55.4 NC_002512.2 + 96289 0.66 0.969408
Target:  5'- aGGUCCGCAGgAGGccGGCccgcucGGGucccCGGCg -3'
miRNA:   3'- cCUAGGUGUCgUCC--UCG------UCCuu--GCCG- -5'
8943 3' -55.4 NC_002512.2 + 192479 0.66 0.966413
Target:  5'- cGGAUCgAC-GCGcGGA-CGGGGACGcGCu -3'
miRNA:   3'- -CCUAGgUGuCGU-CCUcGUCCUUGC-CG- -5'
8943 3' -55.4 NC_002512.2 + 187105 0.66 0.966413
Target:  5'- cGA-CCgACAGCccuacguggaccAGGGGCAGGGGCuGCc -3'
miRNA:   3'- cCUaGG-UGUCG------------UCCUCGUCCUUGcCG- -5'
8943 3' -55.4 NC_002512.2 + 105791 0.66 0.966413
Target:  5'- uGGUCgACGGCGaGGGCGaaGACGGCg -3'
miRNA:   3'- cCUAGgUGUCGUcCUCGUccUUGCCG- -5'
8943 3' -55.4 NC_002512.2 + 227236 0.66 0.966413
Target:  5'- gGGAggCGCGGCGGacGGGCGGGcaucagGACGaGCg -3'
miRNA:   3'- -CCUagGUGUCGUC--CUCGUCC------UUGC-CG- -5'
8943 3' -55.4 NC_002512.2 + 118907 0.66 0.972207
Target:  5'- gGGGcCCGCGcuGUGGGAGaagGGGGACGuGCu -3'
miRNA:   3'- -CCUaGGUGU--CGUCCUCg--UCCUUGC-CG- -5'
8943 3' -55.4 NC_002512.2 + 103699 0.66 0.966413
Target:  5'- cGGA--CGCGGCGGGAGgGGGcGCcGCc -3'
miRNA:   3'- -CCUagGUGUCGUCCUCgUCCuUGcCG- -5'
8943 3' -55.4 NC_002512.2 + 92532 0.66 0.972207
Target:  5'- cGGAUCUACccGGCcGcGGCGGccGCGGCg -3'
miRNA:   3'- -CCUAGGUG--UCGuCcUCGUCcuUGCCG- -5'
8943 3' -55.4 NC_002512.2 + 228001 0.66 0.96853
Target:  5'- aGGG-CCGgAGCcggacGGGAcGCGGGAcgaggggcgaccggACGGCg -3'
miRNA:   3'- -CCUaGGUgUCG-----UCCU-CGUCCU--------------UGCCG- -5'
8943 3' -55.4 NC_002512.2 + 117803 0.66 0.966413
Target:  5'- uGGGUCCGC--CAGGcGaCGGGcucGCGGCg -3'
miRNA:   3'- -CCUAGGUGucGUCCuC-GUCCu--UGCCG- -5'
8943 3' -55.4 NC_002512.2 + 142170 0.66 0.96516
Target:  5'- cGGUCacgacaCACGGCGGGAGaAGGAuccggggucguguCGGCg -3'
miRNA:   3'- cCUAG------GUGUCGUCCUCgUCCUu------------GCCG- -5'
8943 3' -55.4 NC_002512.2 + 49432 0.66 0.972207
Target:  5'- ---aCCACAuccCAGGGGCGGGgugaaaGugGGCu -3'
miRNA:   3'- ccuaGGUGUc--GUCCUCGUCC------UugCCG- -5'
8943 3' -55.4 NC_002512.2 + 227522 0.66 0.969408
Target:  5'- gGGAgagUCCgGCGGCggacGGGGGgAGGAG-GGCg -3'
miRNA:   3'- -CCU---AGG-UGUCG----UCCUCgUCCUUgCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.