miRNA display CGI


Results 1 - 20 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8944 3' -65.1 NC_002512.2 + 112779 0.66 0.641132
Target:  5'- gCCCCgUGCCGCugugccGGGUCCag--GGCGg -3'
miRNA:   3'- aGGGGaGCGGCG------CCCAGGacgaCCGC- -5'
8944 3' -65.1 NC_002512.2 + 124060 0.66 0.641132
Target:  5'- -aCCCUCGUC-UGGGcCCUGCccgggGGCu -3'
miRNA:   3'- agGGGAGCGGcGCCCaGGACGa----CCGc -5'
8944 3' -65.1 NC_002512.2 + 82664 0.66 0.641132
Target:  5'- cUCCCUCGCUGUuuucGcGGUCCcGCUcgGGCu -3'
miRNA:   3'- aGGGGAGCGGCG----C-CCAGGaCGA--CCGc -5'
8944 3' -65.1 NC_002512.2 + 218283 0.66 0.641132
Target:  5'- uUCUCCUCgGCCuCgGGGUCCccgGCccugGGCGg -3'
miRNA:   3'- -AGGGGAG-CGGcG-CCCAGGa--CGa---CCGC- -5'
8944 3' -65.1 NC_002512.2 + 110658 0.66 0.641132
Target:  5'- gCCgCUCGaCCGCGGGcagCCggucCUGGUGc -3'
miRNA:   3'- aGGgGAGC-GGCGCCCa--GGac--GACCGC- -5'
8944 3' -65.1 NC_002512.2 + 97858 0.66 0.631765
Target:  5'- gUCCCUggccgacgacgUCGCCGcCGaGGUCCccccgGCgcccggGGCGg -3'
miRNA:   3'- -AGGGG-----------AGCGGC-GC-CCAGGa----CGa-----CCGC- -5'
8944 3' -65.1 NC_002512.2 + 165114 0.66 0.629892
Target:  5'- aUCUCUC-CCGCGGGgaacgucauccgCCUGUUcGGCGc -3'
miRNA:   3'- aGGGGAGcGGCGCCCa-----------GGACGA-CCGC- -5'
8944 3' -65.1 NC_002512.2 + 157351 0.66 0.622399
Target:  5'- uUCCgCCUgGCCGcCGaGGUCCggGCcgccgGGCa -3'
miRNA:   3'- -AGG-GGAgCGGC-GC-CCAGGa-CGa----CCGc -5'
8944 3' -65.1 NC_002512.2 + 14754 0.66 0.622399
Target:  5'- cUCCCC-CGUCGCGcGGaccccggCCguuCUGGCGg -3'
miRNA:   3'- -AGGGGaGCGGCGC-CCa------GGac-GACCGC- -5'
8944 3' -65.1 NC_002512.2 + 105910 0.66 0.622399
Target:  5'- cUCUCCggCGuCCgGUGGGUCCUcggGgaGGCGg -3'
miRNA:   3'- -AGGGGa-GC-GG-CGCCCAGGA---CgaCCGC- -5'
8944 3' -65.1 NC_002512.2 + 132516 0.66 0.622399
Target:  5'- gUCUCCggcCGCCGC-GGUCCccGCUccgcgGGCGg -3'
miRNA:   3'- -AGGGGa--GCGGCGcCCAGGa-CGA-----CCGC- -5'
8944 3' -65.1 NC_002512.2 + 94668 0.66 0.622399
Target:  5'- -gCCCgggGCCGgGGGgccccccggCCcGCUGGCGg -3'
miRNA:   3'- agGGGag-CGGCgCCCa--------GGaCGACCGC- -5'
8944 3' -65.1 NC_002512.2 + 184920 0.66 0.622399
Target:  5'- cCCCUUCGCCGaggaccgguguuCGGaGUCC-GcCUGGCu -3'
miRNA:   3'- aGGGGAGCGGC------------GCC-CAGGaC-GACCGc -5'
8944 3' -65.1 NC_002512.2 + 219485 0.66 0.622399
Target:  5'- gCCCCUgGg-GCGGGUCagacgaggaUGCUGGCc -3'
miRNA:   3'- aGGGGAgCggCGCCCAGg--------ACGACCGc -5'
8944 3' -65.1 NC_002512.2 + 137868 0.66 0.622399
Target:  5'- cUCCCCcgaCGcCCGCGaGUCCgccGCcGGCGa -3'
miRNA:   3'- -AGGGGa--GC-GGCGCcCAGGa--CGaCCGC- -5'
8944 3' -65.1 NC_002512.2 + 168371 0.66 0.613039
Target:  5'- cUCCUgUCGCaCGCacguggccgucaGGGUCaggUGCUGGUGc -3'
miRNA:   3'- -AGGGgAGCG-GCG------------CCCAGg--ACGACCGC- -5'
8944 3' -65.1 NC_002512.2 + 67771 0.66 0.613039
Target:  5'- gUCUCCggCGCCG-GGGUCgUcggugaGCUGGCc -3'
miRNA:   3'- -AGGGGa-GCGGCgCCCAGgA------CGACCGc -5'
8944 3' -65.1 NC_002512.2 + 121355 0.66 0.613039
Target:  5'- cCUUCUcCGCCGuCGGGUCCccgGCcggucgGGCGc -3'
miRNA:   3'- aGGGGA-GCGGC-GCCCAGGa--CGa-----CCGC- -5'
8944 3' -65.1 NC_002512.2 + 52760 0.66 0.603691
Target:  5'- -----aCG-CGCGGGcCCUGCUGGCGc -3'
miRNA:   3'- aggggaGCgGCGCCCaGGACGACCGC- -5'
8944 3' -65.1 NC_002512.2 + 135750 0.66 0.603691
Target:  5'- gCCUC-CGCCGCGucauccgcGUCCUggccgacgagagGCUGGCGg -3'
miRNA:   3'- aGGGGaGCGGCGCc-------CAGGA------------CGACCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.