Results 1 - 20 of 98 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
8944 | 3' | -65.1 | NC_002512.2 | + | 124060 | 0.66 | 0.641132 |
Target: 5'- -aCCCUCGUC-UGGGcCCUGCccgggGGCu -3' miRNA: 3'- agGGGAGCGGcGCCCaGGACGa----CCGc -5' |
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8944 | 3' | -65.1 | NC_002512.2 | + | 82664 | 0.66 | 0.641132 |
Target: 5'- cUCCCUCGCUGUuuucGcGGUCCcGCUcgGGCu -3' miRNA: 3'- aGGGGAGCGGCG----C-CCAGGaCGA--CCGc -5' |
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8944 | 3' | -65.1 | NC_002512.2 | + | 218283 | 0.66 | 0.641132 |
Target: 5'- uUCUCCUCgGCCuCgGGGUCCccgGCccugGGCGg -3' miRNA: 3'- -AGGGGAG-CGGcG-CCCAGGa--CGa---CCGC- -5' |
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8944 | 3' | -65.1 | NC_002512.2 | + | 112779 | 0.66 | 0.641132 |
Target: 5'- gCCCCgUGCCGCugugccGGGUCCag--GGCGg -3' miRNA: 3'- aGGGGaGCGGCG------CCCAGGacgaCCGC- -5' |
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8944 | 3' | -65.1 | NC_002512.2 | + | 110658 | 0.66 | 0.641132 |
Target: 5'- gCCgCUCGaCCGCGGGcagCCggucCUGGUGc -3' miRNA: 3'- aGGgGAGC-GGCGCCCa--GGac--GACCGC- -5' |
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8944 | 3' | -65.1 | NC_002512.2 | + | 97858 | 0.66 | 0.631765 |
Target: 5'- gUCCCUggccgacgacgUCGCCGcCGaGGUCCccccgGCgcccggGGCGg -3' miRNA: 3'- -AGGGG-----------AGCGGC-GC-CCAGGa----CGa-----CCGC- -5' |
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8944 | 3' | -65.1 | NC_002512.2 | + | 165114 | 0.66 | 0.629892 |
Target: 5'- aUCUCUC-CCGCGGGgaacgucauccgCCUGUUcGGCGc -3' miRNA: 3'- aGGGGAGcGGCGCCCa-----------GGACGA-CCGC- -5' |
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8944 | 3' | -65.1 | NC_002512.2 | + | 157351 | 0.66 | 0.622399 |
Target: 5'- uUCCgCCUgGCCGcCGaGGUCCggGCcgccgGGCa -3' miRNA: 3'- -AGG-GGAgCGGC-GC-CCAGGa-CGa----CCGc -5' |
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8944 | 3' | -65.1 | NC_002512.2 | + | 137868 | 0.66 | 0.622399 |
Target: 5'- cUCCCCcgaCGcCCGCGaGUCCgccGCcGGCGa -3' miRNA: 3'- -AGGGGa--GC-GGCGCcCAGGa--CGaCCGC- -5' |
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8944 | 3' | -65.1 | NC_002512.2 | + | 219485 | 0.66 | 0.622399 |
Target: 5'- gCCCCUgGg-GCGGGUCagacgaggaUGCUGGCc -3' miRNA: 3'- aGGGGAgCggCGCCCAGg--------ACGACCGc -5' |
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8944 | 3' | -65.1 | NC_002512.2 | + | 184920 | 0.66 | 0.622399 |
Target: 5'- cCCCUUCGCCGaggaccgguguuCGGaGUCC-GcCUGGCu -3' miRNA: 3'- aGGGGAGCGGC------------GCC-CAGGaC-GACCGc -5' |
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8944 | 3' | -65.1 | NC_002512.2 | + | 132516 | 0.66 | 0.622399 |
Target: 5'- gUCUCCggcCGCCGC-GGUCCccGCUccgcgGGCGg -3' miRNA: 3'- -AGGGGa--GCGGCGcCCAGGa-CGA-----CCGC- -5' |
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8944 | 3' | -65.1 | NC_002512.2 | + | 94668 | 0.66 | 0.622399 |
Target: 5'- -gCCCgggGCCGgGGGgccccccggCCcGCUGGCGg -3' miRNA: 3'- agGGGag-CGGCgCCCa--------GGaCGACCGC- -5' |
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8944 | 3' | -65.1 | NC_002512.2 | + | 105910 | 0.66 | 0.622399 |
Target: 5'- cUCUCCggCGuCCgGUGGGUCCUcggGgaGGCGg -3' miRNA: 3'- -AGGGGa-GC-GG-CGCCCAGGA---CgaCCGC- -5' |
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8944 | 3' | -65.1 | NC_002512.2 | + | 14754 | 0.66 | 0.622399 |
Target: 5'- cUCCCC-CGUCGCGcGGaccccggCCguuCUGGCGg -3' miRNA: 3'- -AGGGGaGCGGCGC-CCa------GGac-GACCGC- -5' |
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8944 | 3' | -65.1 | NC_002512.2 | + | 168371 | 0.66 | 0.613039 |
Target: 5'- cUCCUgUCGCaCGCacguggccgucaGGGUCaggUGCUGGUGc -3' miRNA: 3'- -AGGGgAGCG-GCG------------CCCAGg--ACGACCGC- -5' |
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8944 | 3' | -65.1 | NC_002512.2 | + | 67771 | 0.66 | 0.613039 |
Target: 5'- gUCUCCggCGCCG-GGGUCgUcggugaGCUGGCc -3' miRNA: 3'- -AGGGGa-GCGGCgCCCAGgA------CGACCGc -5' |
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8944 | 3' | -65.1 | NC_002512.2 | + | 121355 | 0.66 | 0.613039 |
Target: 5'- cCUUCUcCGCCGuCGGGUCCccgGCcggucgGGCGc -3' miRNA: 3'- aGGGGA-GCGGC-GCCCAGGa--CGa-----CCGC- -5' |
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8944 | 3' | -65.1 | NC_002512.2 | + | 52760 | 0.66 | 0.603691 |
Target: 5'- -----aCG-CGCGGGcCCUGCUGGCGc -3' miRNA: 3'- aggggaGCgGCGCCCaGGACGACCGC- -5' |
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8944 | 3' | -65.1 | NC_002512.2 | + | 135750 | 0.66 | 0.603691 |
Target: 5'- gCCUC-CGCCGCGucauccgcGUCCUggccgacgagagGCUGGCGg -3' miRNA: 3'- aGGGGaGCGGCGCc-------CAGGA------------CGACCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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