miRNA display CGI


Results 1 - 20 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8944 3' -65.1 NC_002512.2 + 218283 0.66 0.641132
Target:  5'- uUCUCCUCgGCCuCgGGGUCCccgGCccugGGCGg -3'
miRNA:   3'- -AGGGGAG-CGGcG-CCCAGGa--CGa---CCGC- -5'
8944 3' -65.1 NC_002512.2 + 184570 0.67 0.54816
Target:  5'- -gCCCUCcgacCCGCGGG-CCgGCagGGCGg -3'
miRNA:   3'- agGGGAGc---GGCGCCCaGGaCGa-CCGC- -5'
8944 3' -65.1 NC_002512.2 + 132004 0.67 0.54816
Target:  5'- gCCCCgggCGCCGgGGGgaCCUcgGC-GGCGa -3'
miRNA:   3'- aGGGGa--GCGGCgCCCa-GGA--CGaCCGC- -5'
8944 3' -65.1 NC_002512.2 + 226498 1.08 0.000842
Target:  5'- cUCCCCUCGCCGCGGGUCCUGCUGGCGg -3'
miRNA:   3'- -AGGGGAGCGGCGCCCAGGACGACCGC- -5'
8944 3' -65.1 NC_002512.2 + 137868 0.66 0.622399
Target:  5'- cUCCCCcgaCGcCCGCGaGUCCgccGCcGGCGa -3'
miRNA:   3'- -AGGGGa--GC-GGCGCcCAGGa--CGaCCGC- -5'
8944 3' -65.1 NC_002512.2 + 219485 0.66 0.622399
Target:  5'- gCCCCUgGg-GCGGGUCagacgaggaUGCUGGCc -3'
miRNA:   3'- aGGGGAgCggCGCCCAGg--------ACGACCGc -5'
8944 3' -65.1 NC_002512.2 + 132516 0.66 0.622399
Target:  5'- gUCUCCggcCGCCGC-GGUCCccGCUccgcgGGCGg -3'
miRNA:   3'- -AGGGGa--GCGGCGcCCAGGa-CGA-----CCGC- -5'
8944 3' -65.1 NC_002512.2 + 94668 0.66 0.622399
Target:  5'- -gCCCgggGCCGgGGGgccccccggCCcGCUGGCGg -3'
miRNA:   3'- agGGGag-CGGCgCCCa--------GGaCGACCGC- -5'
8944 3' -65.1 NC_002512.2 + 217701 0.66 0.59436
Target:  5'- uUCCCCgccggCGUCGaCGaGGUCC-GCUucaggGGCGg -3'
miRNA:   3'- -AGGGGa----GCGGC-GC-CCAGGaCGA-----CCGC- -5'
8944 3' -65.1 NC_002512.2 + 194608 0.67 0.555487
Target:  5'- aUCCCUccgccgccgcggccgUCGCCGCGGGggaCCUGCccgUccucuucuccgaucgGGCGg -3'
miRNA:   3'- -AGGGG---------------AGCGGCGCCCa--GGACG---A---------------CCGC- -5'
8944 3' -65.1 NC_002512.2 + 116187 0.66 0.585053
Target:  5'- gUUCCacgCGCUGCGGG-CCagGCaGGCGg -3'
miRNA:   3'- -AGGGga-GCGGCGCCCaGGa-CGaCCGC- -5'
8944 3' -65.1 NC_002512.2 + 204975 0.66 0.603691
Target:  5'- gCCCgaCGCCGCGGGcgacggggaCCggaagGCgggGGCGa -3'
miRNA:   3'- aGGGgaGCGGCGCCCa--------GGa----CGa--CCGC- -5'
8944 3' -65.1 NC_002512.2 + 110658 0.66 0.641132
Target:  5'- gCCgCUCGaCCGCGGGcagCCggucCUGGUGc -3'
miRNA:   3'- aGGgGAGC-GGCGCCCa--GGac--GACCGC- -5'
8944 3' -65.1 NC_002512.2 + 196386 0.67 0.579482
Target:  5'- aCUUCgggaCGCCGCGGGUCUgGCgcggggacgcggggGGCGg -3'
miRNA:   3'- aGGGGa---GCGGCGCCCAGGaCGa-------------CCGC- -5'
8944 3' -65.1 NC_002512.2 + 165114 0.66 0.629892
Target:  5'- aUCUCUC-CCGCGGGgaacgucauccgCCUGUUcGGCGc -3'
miRNA:   3'- aGGGGAGcGGCGCCCa-----------GGACGA-CCGC- -5'
8944 3' -65.1 NC_002512.2 + 168371 0.66 0.613039
Target:  5'- cUCCUgUCGCaCGCacguggccgucaGGGUCaggUGCUGGUGc -3'
miRNA:   3'- -AGGGgAGCG-GCG------------CCCAGg--ACGACCGC- -5'
8944 3' -65.1 NC_002512.2 + 146927 0.67 0.56653
Target:  5'- gCgCCgugCGCCGCGa--CCUGCUGGCc -3'
miRNA:   3'- aGgGGa--GCGGCGCccaGGACGACCGc -5'
8944 3' -65.1 NC_002512.2 + 175589 0.67 0.54816
Target:  5'- aCCaCgUCGCCguGCGGGUCCUuCgGGUGg -3'
miRNA:   3'- aGG-GgAGCGG--CGCCCAGGAcGaCCGC- -5'
8944 3' -65.1 NC_002512.2 + 157351 0.66 0.622399
Target:  5'- uUCCgCCUgGCCGcCGaGGUCCggGCcgccgGGCa -3'
miRNA:   3'- -AGG-GGAgCGGC-GC-CCAGGa-CGa----CCGc -5'
8944 3' -65.1 NC_002512.2 + 184920 0.66 0.622399
Target:  5'- cCCCUUCGCCGaggaccgguguuCGGaGUCC-GcCUGGCu -3'
miRNA:   3'- aGGGGAGCGGC------------GCC-CAGGaC-GACCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.