miRNA display CGI


Results 21 - 40 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8944 3' -65.1 NC_002512.2 + 219353 0.67 0.5336
Target:  5'- gCCCggCGuCCGCGaGGUCCUGCgccucugcucccugGGCu -3'
miRNA:   3'- aGGGgaGC-GGCGC-CCAGGACGa-------------CCGc -5'
8944 3' -65.1 NC_002512.2 + 132004 0.67 0.54816
Target:  5'- gCCCCgggCGCCGgGGGgaCCUcgGC-GGCGa -3'
miRNA:   3'- aGGGGa--GCGGCgCCCa-GGA--CGaCCGC- -5'
8944 3' -65.1 NC_002512.2 + 204975 0.66 0.603691
Target:  5'- gCCCgaCGCCGCGGGcgacggggaCCggaagGCgggGGCGa -3'
miRNA:   3'- aGGGgaGCGGCGCCCa--------GGa----CGa--CCGC- -5'
8944 3' -65.1 NC_002512.2 + 157351 0.66 0.622399
Target:  5'- uUCCgCCUgGCCGcCGaGGUCCggGCcgccgGGCa -3'
miRNA:   3'- -AGG-GGAgCGGC-GC-CCAGGa-CGa----CCGc -5'
8944 3' -65.1 NC_002512.2 + 133064 0.69 0.443041
Target:  5'- gCCCCUgCagguacugcagGCgGUGGGUCCgGUUGGCGc -3'
miRNA:   3'- aGGGGA-G-----------CGgCGCCCAGGaCGACCGC- -5'
8944 3' -65.1 NC_002512.2 + 105334 0.68 0.512027
Target:  5'- cUCCuCCUCGCCGaCGaGGUaggaGUUGGCGu -3'
miRNA:   3'- -AGG-GGAGCGGC-GC-CCAgga-CGACCGC- -5'
8944 3' -65.1 NC_002512.2 + 184570 0.67 0.54816
Target:  5'- -gCCCUCcgacCCGCGGG-CCgGCagGGCGg -3'
miRNA:   3'- agGGGAGc---GGCGCCCaGGaCGa-CCGC- -5'
8944 3' -65.1 NC_002512.2 + 165114 0.66 0.629892
Target:  5'- aUCUCUC-CCGCGGGgaacgucauccgCCUGUUcGGCGc -3'
miRNA:   3'- aGGGGAGcGGCGCCCa-----------GGACGA-CCGC- -5'
8944 3' -65.1 NC_002512.2 + 215526 0.68 0.520974
Target:  5'- aCCUCgauccCGCCcucCGGGagaUCCUGCUGGCc -3'
miRNA:   3'- aGGGGa----GCGGc--GCCC---AGGACGACCGc -5'
8944 3' -65.1 NC_002512.2 + 110658 0.66 0.641132
Target:  5'- gCCgCUCGaCCGCGGGcagCCggucCUGGUGc -3'
miRNA:   3'- aGGgGAGC-GGCGCCCa--GGac--GACCGC- -5'
8944 3' -65.1 NC_002512.2 + 175589 0.67 0.54816
Target:  5'- aCCaCgUCGCCguGCGGGUCCUuCgGGUGg -3'
miRNA:   3'- aGG-GgAGCGG--CGCCCAGGAcGaCCGC- -5'
8944 3' -65.1 NC_002512.2 + 184207 0.67 0.529981
Target:  5'- cUCCCCggaCCGCGGGUUCUcuCUGGgGu -3'
miRNA:   3'- -AGGGGagcGGCGCCCAGGAc-GACCgC- -5'
8944 3' -65.1 NC_002512.2 + 196386 0.67 0.579482
Target:  5'- aCUUCgggaCGCCGCGGGUCUgGCgcggggacgcggggGGCGg -3'
miRNA:   3'- aGGGGa---GCGGCGCCCAGGaCGa-------------CCGC- -5'
8944 3' -65.1 NC_002512.2 + 217701 0.66 0.59436
Target:  5'- uUCCCCgccggCGUCGaCGaGGUCC-GCUucaggGGCGg -3'
miRNA:   3'- -AGGGGa----GCGGC-GC-CCAGGaCGA-----CCGC- -5'
8944 3' -65.1 NC_002512.2 + 132516 0.66 0.622399
Target:  5'- gUCUCCggcCGCCGC-GGUCCccGCUccgcgGGCGg -3'
miRNA:   3'- -AGGGGa--GCGGCGcCCAGGa-CGA-----CCGC- -5'
8944 3' -65.1 NC_002512.2 + 137868 0.66 0.622399
Target:  5'- cUCCCCcgaCGcCCGCGaGUCCgccGCcGGCGa -3'
miRNA:   3'- -AGGGGa--GC-GGCGCcCAGGa--CGaCCGC- -5'
8944 3' -65.1 NC_002512.2 + 153257 0.69 0.426619
Target:  5'- -aCCCgaugcgaUGCgGCGGGUCCUggucgGCUGGCu -3'
miRNA:   3'- agGGGa------GCGgCGCCCAGGA-----CGACCGc -5'
8944 3' -65.1 NC_002512.2 + 126647 0.69 0.443041
Target:  5'- -gCCCUCGCCGCGGccGUCgacggGC-GGCGa -3'
miRNA:   3'- agGGGAGCGGCGCC--CAGga---CGaCCGC- -5'
8944 3' -65.1 NC_002512.2 + 75312 0.68 0.484716
Target:  5'- gUCgCCCUCGCCGUua-UCCUGCccccccaUGGCGa -3'
miRNA:   3'- -AG-GGGAGCGGCGcccAGGACG-------ACCGC- -5'
8944 3' -65.1 NC_002512.2 + 201661 0.68 0.49433
Target:  5'- gCCCCg-GCCGCGGuUCCUucuucgGCgagGGCGg -3'
miRNA:   3'- aGGGGagCGGCGCCcAGGA------CGa--CCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.