Results 41 - 60 of 98 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8944 | 3' | -65.1 | NC_002512.2 | + | 192174 | 0.67 | 0.539044 |
Target: 5'- -gCCCUCGCUGUccGUCCUGCgccGCGg -3' miRNA: 3'- agGGGAGCGGCGccCAGGACGac-CGC- -5' |
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8944 | 3' | -65.1 | NC_002512.2 | + | 61760 | 0.67 | 0.539044 |
Target: 5'- gCCCCUCGCCGCGG--CCg---GGCc -3' miRNA: 3'- aGGGGAGCGGCGCCcaGGacgaCCGc -5' |
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8944 | 3' | -65.1 | NC_002512.2 | + | 9210 | 0.67 | 0.539044 |
Target: 5'- gUCCCgUCGCCcagcacgacgcgGCGGG-CCaGgUGGCGc -3' miRNA: 3'- -AGGGgAGCGG------------CGCCCaGGaCgACCGC- -5' |
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8944 | 3' | -65.1 | NC_002512.2 | + | 219353 | 0.67 | 0.5336 |
Target: 5'- gCCCggCGuCCGCGaGGUCCUGCgccucugcucccugGGCu -3' miRNA: 3'- aGGGgaGC-GGCGC-CCAGGACGa-------------CCGc -5' |
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8944 | 3' | -65.1 | NC_002512.2 | + | 70503 | 0.67 | 0.529981 |
Target: 5'- gCCCCgaCGCCGCGGGaCCcGCgaaugGGaCGc -3' miRNA: 3'- aGGGGa-GCGGCGCCCaGGaCGa----CC-GC- -5' |
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8944 | 3' | -65.1 | NC_002512.2 | + | 184207 | 0.67 | 0.529981 |
Target: 5'- cUCCCCggaCCGCGGGUUCUcuCUGGgGu -3' miRNA: 3'- -AGGGGagcGGCGCCCAGGAc-GACCgC- -5' |
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8944 | 3' | -65.1 | NC_002512.2 | + | 102480 | 0.67 | 0.529981 |
Target: 5'- gCCCgUCGCgGUGgcGGUCCcGCaGGCGg -3' miRNA: 3'- aGGGgAGCGgCGC--CCAGGaCGaCCGC- -5' |
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8944 | 3' | -65.1 | NC_002512.2 | + | 96579 | 0.67 | 0.529981 |
Target: 5'- aUCCuCCUC-CCGCcucgGGGUCCU-CUGGgGa -3' miRNA: 3'- -AGG-GGAGcGGCG----CCCAGGAcGACCgC- -5' |
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8944 | 3' | -65.1 | NC_002512.2 | + | 46990 | 0.68 | 0.520974 |
Target: 5'- gCgCC-CGCCGagaGGGgccgcuUCUUGCUGGCGg -3' miRNA: 3'- aGgGGaGCGGCg--CCC------AGGACGACCGC- -5' |
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8944 | 3' | -65.1 | NC_002512.2 | + | 215526 | 0.68 | 0.520974 |
Target: 5'- aCCUCgauccCGCCcucCGGGagaUCCUGCUGGCc -3' miRNA: 3'- aGGGGa----GCGGc--GCCC---AGGACGACCGc -5' |
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8944 | 3' | -65.1 | NC_002512.2 | + | 105334 | 0.68 | 0.512027 |
Target: 5'- cUCCuCCUCGCCGaCGaGGUaggaGUUGGCGu -3' miRNA: 3'- -AGG-GGAGCGGC-GC-CCAgga-CGACCGC- -5' |
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8944 | 3' | -65.1 | NC_002512.2 | + | 110559 | 0.68 | 0.512027 |
Target: 5'- gCCCC-CGCgCGgGaGGUCCUGCcgGGUc -3' miRNA: 3'- aGGGGaGCG-GCgC-CCAGGACGa-CCGc -5' |
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8944 | 3' | -65.1 | NC_002512.2 | + | 69049 | 0.68 | 0.503145 |
Target: 5'- -gCCCagCGCCGCcGGccgcccgCCUGCUGGUGc -3' miRNA: 3'- agGGGa-GCGGCGcCCa------GGACGACCGC- -5' |
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8944 | 3' | -65.1 | NC_002512.2 | + | 65394 | 0.68 | 0.503145 |
Target: 5'- uUCCCCUgGgaCGUGGaGUCCUcguaGCUcGGCGg -3' miRNA: 3'- -AGGGGAgCg-GCGCC-CAGGA----CGA-CCGC- -5' |
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8944 | 3' | -65.1 | NC_002512.2 | + | 29650 | 0.68 | 0.503145 |
Target: 5'- gUCCCCgUCGUCGuCGGGcUCCUcggGCUccGGCu -3' miRNA: 3'- -AGGGG-AGCGGC-GCCC-AGGA---CGA--CCGc -5' |
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8944 | 3' | -65.1 | NC_002512.2 | + | 2562 | 0.68 | 0.503145 |
Target: 5'- gUCCCCUuccucgggCGCCgGCGcGUCUcccccaUGCUGGCGc -3' miRNA: 3'- -AGGGGA--------GCGG-CGCcCAGG------ACGACCGC- -5' |
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8944 | 3' | -65.1 | NC_002512.2 | + | 201661 | 0.68 | 0.49433 |
Target: 5'- gCCCCg-GCCGCGGuUCCUucuucgGCgagGGCGg -3' miRNA: 3'- aGGGGagCGGCGCCcAGGA------CGa--CCGC- -5' |
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8944 | 3' | -65.1 | NC_002512.2 | + | 174253 | 0.68 | 0.485587 |
Target: 5'- cUCCCUCGCC-CGGGUCCg---GGUc -3' miRNA: 3'- aGGGGAGCGGcGCCCAGGacgaCCGc -5' |
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8944 | 3' | -65.1 | NC_002512.2 | + | 144712 | 0.68 | 0.485587 |
Target: 5'- aCCCgUCGCgCcUGGGUCa-GCUGGCGc -3' miRNA: 3'- aGGGgAGCG-GcGCCCAGgaCGACCGC- -5' |
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8944 | 3' | -65.1 | NC_002512.2 | + | 75312 | 0.68 | 0.484716 |
Target: 5'- gUCgCCCUCGCCGUua-UCCUGCccccccaUGGCGa -3' miRNA: 3'- -AG-GGGAGCGGCGcccAGGACG-------ACCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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