Results 1 - 20 of 56 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8945 | 3' | -57.1 | NC_002512.2 | + | 188774 | 0.66 | 0.952052 |
Target: 5'- gCGg--UUCCGGCgGCGGCUCCggccucgGCGGc -3' miRNA: 3'- aGCagaGAGGCUG-CGCUGAGGa------CGCU- -5' |
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8945 | 3' | -57.1 | NC_002512.2 | + | 222887 | 0.67 | 0.914204 |
Target: 5'- gCGgCUCUCCuGCGacuucgagGGCUCCUGCGu -3' miRNA: 3'- aGCaGAGAGGcUGCg-------CUGAGGACGCu -5' |
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8945 | 3' | -57.1 | NC_002512.2 | + | 224786 | 0.67 | 0.902572 |
Target: 5'- aUGUCUCUCCcgcccGCGcCGACgCCgGCGAc -3' miRNA: 3'- aGCAGAGAGGc----UGC-GCUGaGGaCGCU- -5' |
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8945 | 3' | -57.1 | NC_002512.2 | + | 225869 | 1.09 | 0.00427 |
Target: 5'- gUCGUCUCUCCGACGCGACUCCUGCGAc -3' miRNA: 3'- -AGCAGAGAGGCUGCGCUGAGGACGCU- -5' |
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8945 | 3' | -57.1 | NC_002512.2 | + | 108168 | 0.66 | 0.948076 |
Target: 5'- gCGUCg--CCGGCGC--CUUCUGCGGc -3' miRNA: 3'- aGCAGagaGGCUGCGcuGAGGACGCU- -5' |
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8945 | 3' | -57.1 | NC_002512.2 | + | 218399 | 0.66 | 0.948076 |
Target: 5'- gUCGUcCUCUCCGuCGuCGuCgUCCUcGCGGu -3' miRNA: 3'- -AGCA-GAGAGGCuGC-GCuG-AGGA-CGCU- -5' |
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8945 | 3' | -57.1 | NC_002512.2 | + | 215464 | 0.66 | 0.943887 |
Target: 5'- -gGUCaUCgCCGGCGuCGACUCCUccugGCGc -3' miRNA: 3'- agCAG-AGaGGCUGC-GCUGAGGA----CGCu -5' |
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8945 | 3' | -57.1 | NC_002512.2 | + | 154685 | 0.66 | 0.939483 |
Target: 5'- cCGUCcgCUCCGA-GCGGCcgUCCgGCGu -3' miRNA: 3'- aGCAGa-GAGGCUgCGCUG--AGGaCGCu -5' |
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8945 | 3' | -57.1 | NC_002512.2 | + | 218821 | 0.66 | 0.934863 |
Target: 5'- cCGUCUCgcCCucCGCGGC-CCUGCu- -3' miRNA: 3'- aGCAGAGa-GGcuGCGCUGaGGACGcu -5' |
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8945 | 3' | -57.1 | NC_002512.2 | + | 158318 | 0.67 | 0.919696 |
Target: 5'- -gGUCg-UCCGGCGCGAgUCC-GCGc -3' miRNA: 3'- agCAGagAGGCUGCGCUgAGGaCGCu -5' |
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8945 | 3' | -57.1 | NC_002512.2 | + | 194647 | 0.66 | 0.930025 |
Target: 5'- cCGUCcucuUCUCCGAUcggGCGG-UCCUGCa- -3' miRNA: 3'- aGCAG----AGAGGCUG---CGCUgAGGACGcu -5' |
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8945 | 3' | -57.1 | NC_002512.2 | + | 217635 | 0.66 | 0.939483 |
Target: 5'- -gGUCUCgugCUGAUGCGGauggCCUGCu- -3' miRNA: 3'- agCAGAGa--GGCUGCGCUga--GGACGcu -5' |
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8945 | 3' | -57.1 | NC_002512.2 | + | 56676 | 0.66 | 0.951664 |
Target: 5'- --cUCUCUCCGGCaagauggGCGAUUCCggUGCa- -3' miRNA: 3'- agcAGAGAGGCUG-------CGCUGAGG--ACGcu -5' |
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8945 | 3' | -57.1 | NC_002512.2 | + | 207537 | 0.67 | 0.919696 |
Target: 5'- gCGUC-CUCCcGCuGCGACUCCUcccucGCGu -3' miRNA: 3'- aGCAGaGAGGcUG-CGCUGAGGA-----CGCu -5' |
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8945 | 3' | -57.1 | NC_002512.2 | + | 77968 | 0.66 | 0.950881 |
Target: 5'- uUCGUCUCggggaCCGACGaCGGCaugCCUaccggaaacgauccGCGGa -3' miRNA: 3'- -AGCAGAGa----GGCUGC-GCUGa--GGA--------------CGCU- -5' |
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8945 | 3' | -57.1 | NC_002512.2 | + | 141713 | 0.66 | 0.939483 |
Target: 5'- cUCGUC-C-CgGACGCGACcgUCCcggGCGAc -3' miRNA: 3'- -AGCAGaGaGgCUGCGCUG--AGGa--CGCU- -5' |
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8945 | 3' | -57.1 | NC_002512.2 | + | 201639 | 0.67 | 0.919696 |
Target: 5'- cCGUCguaCUCgCGGCGCGACggccCCggccGCGGu -3' miRNA: 3'- aGCAGa--GAG-GCUGCGCUGa---GGa---CGCU- -5' |
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8945 | 3' | -57.1 | NC_002512.2 | + | 98830 | 0.67 | 0.908496 |
Target: 5'- aUCGgC-CUCCGGCGCGGCgccgUCCUcccccGCGGc -3' miRNA: 3'- -AGCaGaGAGGCUGCGCUG----AGGA-----CGCU- -5' |
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8945 | 3' | -57.1 | NC_002512.2 | + | 78277 | 0.66 | 0.950487 |
Target: 5'- aCGUUguUCUCCGACGCGcggaccgugucguCUCguuuccgcgaCUGCGAg -3' miRNA: 3'- aGCAG--AGAGGCUGCGCu------------GAG----------GACGCU- -5' |
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8945 | 3' | -57.1 | NC_002512.2 | + | 201817 | 0.66 | 0.943887 |
Target: 5'- cCGUCUCcgCCG-CGCccgggGGCUCCUuccGCGGc -3' miRNA: 3'- aGCAGAGa-GGCuGCG-----CUGAGGA---CGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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