Results 21 - 40 of 193 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8945 | 5' | -59.6 | NC_002512.2 | + | 147215 | 0.67 | 0.856815 |
Target: 5'- gCCCGAGcGGGAC-CG-CGAaaacagCGAGGGa -3' miRNA: 3'- aGGGCUC-CUCUGcGCaGCUg-----GCUCCC- -5' |
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8945 | 5' | -59.6 | NC_002512.2 | + | 155809 | 0.67 | 0.861806 |
Target: 5'- cCUCGAGGAGGcCGUGUcCGugCagauccgcucccggGAGGGc -3' miRNA: 3'- aGGGCUCCUCU-GCGCA-GCugG--------------CUCCC- -5' |
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8945 | 5' | -59.6 | NC_002512.2 | + | 213014 | 0.66 | 0.884129 |
Target: 5'- gCCCGGGGcccucucgAGGUGCGUCcGCCGgcugcGGGGg -3' miRNA: 3'- aGGGCUCC--------UCUGCGCAGcUGGC-----UCCC- -5' |
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8945 | 5' | -59.6 | NC_002512.2 | + | 227233 | 0.66 | 0.896647 |
Target: 5'- -aCCG-GGAGGCGCGgCGGaCGGGcGGg -3' miRNA: 3'- agGGCuCCUCUGCGCaGCUgGCUC-CC- -5' |
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8945 | 5' | -59.6 | NC_002512.2 | + | 219852 | 0.67 | 0.826702 |
Target: 5'- gCCCGGGGgcggaucgcGGACGgGUgacgaGGCCGGGGu -3' miRNA: 3'- aGGGCUCC---------UCUGCgCAg----CUGGCUCCc -5' |
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8945 | 5' | -59.6 | NC_002512.2 | + | 98156 | 0.67 | 0.837539 |
Target: 5'- cCCCGGcggucgccgcggucuGGAcgGGCGCGgCGAccguCCGAGGGa -3' miRNA: 3'- aGGGCU---------------CCU--CUGCGCaGCU----GGCUCCC- -5' |
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8945 | 5' | -59.6 | NC_002512.2 | + | 130782 | 0.67 | 0.863918 |
Target: 5'- aCCaCGAGGAgggccgccGACGCGcagcacgcggUGGCCGAGGu -3' miRNA: 3'- aGG-GCUCCU--------CUGCGCa---------GCUGGCUCCc -5' |
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8945 | 5' | -59.6 | NC_002512.2 | + | 131530 | 0.66 | 0.902609 |
Target: 5'- gCCgGAGGgAGACGa---GGCgGAGGGg -3' miRNA: 3'- aGGgCUCC-UCUGCgcagCUGgCUCCC- -5' |
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8945 | 5' | -59.6 | NC_002512.2 | + | 160864 | 0.67 | 0.842088 |
Target: 5'- gUCgCaGAGGggcGGACaCGUCGGCgGAGGGu -3' miRNA: 3'- -AGgG-CUCC---UCUGcGCAGCUGgCUCCC- -5' |
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8945 | 5' | -59.6 | NC_002512.2 | + | 149288 | 0.66 | 0.902609 |
Target: 5'- gCgCGAGGAgGGCGagauCGUCGACCGccgcgcGGGc -3' miRNA: 3'- aGgGCUCCU-CUGC----GCAGCUGGCu-----CCC- -5' |
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8945 | 5' | -59.6 | NC_002512.2 | + | 222631 | 0.67 | 0.861806 |
Target: 5'- aUCCCGAcGGAcgccgcuccgccgcGACGgcCGgccgGGCCGAGGGg -3' miRNA: 3'- -AGGGCU-CCU--------------CUGC--GCag--CUGGCUCCC- -5' |
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8945 | 5' | -59.6 | NC_002512.2 | + | 138601 | 0.67 | 0.856815 |
Target: 5'- -gCCGGGGAGACGC--UGGCCaAGGu -3' miRNA: 3'- agGGCUCCUCUGCGcaGCUGGcUCCc -5' |
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8945 | 5' | -59.6 | NC_002512.2 | + | 208877 | 0.66 | 0.87758 |
Target: 5'- aCUCGGGGGGACGgGaggGGCCGGGa- -3' miRNA: 3'- aGGGCUCCUCUGCgCag-CUGGCUCcc -5' |
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8945 | 5' | -59.6 | NC_002512.2 | + | 203108 | 0.66 | 0.884129 |
Target: 5'- gUCUCGaAGGccAGG-GCGUCGGCCGAGucguGGg -3' miRNA: 3'- -AGGGC-UCC--UCUgCGCAGCUGGCUC----CC- -5' |
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8945 | 5' | -59.6 | NC_002512.2 | + | 156454 | 0.66 | 0.890486 |
Target: 5'- cUCCGGGGGcGGCGgGg-GACuCGGGGGc -3' miRNA: 3'- aGGGCUCCU-CUGCgCagCUG-GCUCCC- -5' |
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8945 | 5' | -59.6 | NC_002512.2 | + | 150047 | 0.66 | 0.896647 |
Target: 5'- -gCCGGGGAcGACGgGgCGGgaGGGGGg -3' miRNA: 3'- agGGCUCCU-CUGCgCaGCUggCUCCC- -5' |
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8945 | 5' | -59.6 | NC_002512.2 | + | 123639 | 0.68 | 0.818777 |
Target: 5'- gUCCCGGGGAGA-GCG-CG-CCGcGGu -3' miRNA: 3'- -AGGGCUCCUCUgCGCaGCuGGCuCCc -5' |
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8945 | 5' | -59.6 | NC_002512.2 | + | 227969 | 0.67 | 0.825916 |
Target: 5'- gCCggaGAGGAGggccccgGCGcCGagGGCCGAGGGc -3' miRNA: 3'- aGGg--CUCCUC-------UGC-GCagCUGGCUCCC- -5' |
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8945 | 5' | -59.6 | NC_002512.2 | + | 228105 | 0.67 | 0.832932 |
Target: 5'- --gCGAGGAGG-GCGUCGGCCGcaacgucgugcuGGGc -3' miRNA: 3'- aggGCUCCUCUgCGCAGCUGGCu-----------CCC- -5' |
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8945 | 5' | -59.6 | NC_002512.2 | + | 228481 | 0.67 | 0.834474 |
Target: 5'- -aCCGAGGGGAC-CGaaGACgCGgAGGGg -3' miRNA: 3'- agGGCUCCUCUGcGCagCUG-GC-UCCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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