miRNA display CGI


Results 1 - 20 of 193 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8945 5' -59.6 NC_002512.2 + 192554 0.66 0.902609
Target:  5'- uUCCCGAca--GCGCGUCcguGGCCGGGGc -3'
miRNA:   3'- -AGGGCUccucUGCGCAG---CUGGCUCCc -5'
8945 5' -59.6 NC_002512.2 + 130782 0.67 0.863918
Target:  5'- aCCaCGAGGAgggccgccGACGCGcagcacgcggUGGCCGAGGu -3'
miRNA:   3'- aGG-GCUCCU--------CUGCGCa---------GCUGGCUCCc -5'
8945 5' -59.6 NC_002512.2 + 155809 0.67 0.861806
Target:  5'- cCUCGAGGAGGcCGUGUcCGugCagauccgcucccggGAGGGc -3'
miRNA:   3'- aGGGCUCCUCU-GCGCA-GCugG--------------CUCCC- -5'
8945 5' -59.6 NC_002512.2 + 225906 1.11 0.002227
Target:  5'- cUCCCGAGGAGACGCGUCGACCGAGGGg -3'
miRNA:   3'- -AGGGCUCCUCUGCGCAGCUGGCUCCC- -5'
8945 5' -59.6 NC_002512.2 + 150047 0.66 0.896647
Target:  5'- -gCCGGGGAcGACGgGgCGGgaGGGGGg -3'
miRNA:   3'- agGGCUCCU-CUGCgCaGCUggCUCCC- -5'
8945 5' -59.6 NC_002512.2 + 123533 0.66 0.896647
Target:  5'- gCCgCGAGGuGGCgagcucGCGggacgagCGACCGGGGa -3'
miRNA:   3'- aGG-GCUCCuCUG------CGCa------GCUGGCUCCc -5'
8945 5' -59.6 NC_002512.2 + 156454 0.66 0.890486
Target:  5'- cUCCGGGGGcGGCGgGg-GACuCGGGGGc -3'
miRNA:   3'- aGGGCUCCU-CUGCgCagCUG-GCUCCC- -5'
8945 5' -59.6 NC_002512.2 + 150541 0.66 0.890486
Target:  5'- gCCgCGAGGGuACGCcgccgCGACCuggGAGGGg -3'
miRNA:   3'- aGG-GCUCCUcUGCGca---GCUGG---CUCCC- -5'
8945 5' -59.6 NC_002512.2 + 203108 0.66 0.884129
Target:  5'- gUCUCGaAGGccAGG-GCGUCGGCCGAGucguGGg -3'
miRNA:   3'- -AGGGC-UCC--UCUgCGCAGCUGGCUC----CC- -5'
8945 5' -59.6 NC_002512.2 + 218093 0.66 0.870841
Target:  5'- gUCCGuGGGGAagcggGCGUCGcGCCcGGGGu -3'
miRNA:   3'- aGGGCuCCUCUg----CGCAGC-UGGcUCCC- -5'
8945 5' -59.6 NC_002512.2 + 196396 0.66 0.87758
Target:  5'- -gCCGcGGGucuGGCGCGggGACgCGGGGGg -3'
miRNA:   3'- agGGC-UCCu--CUGCGCagCUG-GCUCCC- -5'
8945 5' -59.6 NC_002512.2 + 213014 0.66 0.884129
Target:  5'- gCCCGGGGcccucucgAGGUGCGUCcGCCGgcugcGGGGg -3'
miRNA:   3'- aGGGCUCC--------UCUGCGCAGcUGGC-----UCCC- -5'
8945 5' -59.6 NC_002512.2 + 149288 0.66 0.902609
Target:  5'- gCgCGAGGAgGGCGagauCGUCGACCGccgcgcGGGc -3'
miRNA:   3'- aGgGCUCCU-CUGC----GCAGCUGGCu-----CCC- -5'
8945 5' -59.6 NC_002512.2 + 208877 0.66 0.87758
Target:  5'- aCUCGGGGGGACGgGaggGGCCGGGa- -3'
miRNA:   3'- aGGGCUCCUCUGCgCag-CUGGCUCcc -5'
8945 5' -59.6 NC_002512.2 + 131530 0.66 0.902609
Target:  5'- gCCgGAGGgAGACGa---GGCgGAGGGg -3'
miRNA:   3'- aGGgCUCC-UCUGCgcagCUGgCUCCC- -5'
8945 5' -59.6 NC_002512.2 + 147686 0.66 0.884129
Target:  5'- cCCCGGGaGGACGC--CGGCCGAcGGc -3'
miRNA:   3'- aGGGCUCcUCUGCGcaGCUGGCUcCC- -5'
8945 5' -59.6 NC_002512.2 + 228441 0.66 0.870841
Target:  5'- --aCGGGGAGgagcggacGCGCGUauauaGacGCCGAGGGg -3'
miRNA:   3'- aggGCUCCUC--------UGCGCAg----C--UGGCUCCC- -5'
8945 5' -59.6 NC_002512.2 + 222631 0.67 0.861806
Target:  5'- aUCCCGAcGGAcgccgcuccgccgcGACGgcCGgccgGGCCGAGGGg -3'
miRNA:   3'- -AGGGCU-CCU--------------CUGC--GCag--CUGGCUCCC- -5'
8945 5' -59.6 NC_002512.2 + 227233 0.66 0.896647
Target:  5'- -aCCG-GGAGGCGCGgCGGaCGGGcGGg -3'
miRNA:   3'- agGGCuCCUCUGCGCaGCUgGCUC-CC- -5'
8945 5' -59.6 NC_002512.2 + 164586 0.66 0.890486
Target:  5'- cUCCGGGGAgGACGCGgcggCGauGCUcAGGGc -3'
miRNA:   3'- aGGGCUCCU-CUGCGCa---GC--UGGcUCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.