Results 1 - 20 of 354 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
8946 | 5' | -62.1 | NC_002512.2 | + | 108164 | 0.66 | 0.814021 |
Target: 5'- -uCCGG-CGUCGCCGGcGccuucugcGGCGUUcagGGCg -3' miRNA: 3'- cuGGCCuGCAGCGGCC-C--------CUGCAG---CCG- -5' |
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8946 | 5' | -62.1 | NC_002512.2 | + | 170799 | 0.66 | 0.814021 |
Target: 5'- cGACgGcGGCGaggggagCGaCGGGGGCGgcagCGGCg -3' miRNA: 3'- -CUGgC-CUGCa------GCgGCCCCUGCa---GCCG- -5' |
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8946 | 5' | -62.1 | NC_002512.2 | + | 84331 | 0.66 | 0.814021 |
Target: 5'- cGCCGcaGCGUCGCCGcguccucgagcGGGAUGcucCGGCc -3' miRNA: 3'- cUGGCc-UGCAGCGGC-----------CCCUGCa--GCCG- -5' |
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8946 | 5' | -62.1 | NC_002512.2 | + | 24206 | 0.66 | 0.814021 |
Target: 5'- cGACaGGACGgugaCGCCGGaGcuguccgaGGCGUCGGg -3' miRNA: 3'- -CUGgCCUGCa---GCGGCC-C--------CUGCAGCCg -5' |
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8946 | 5' | -62.1 | NC_002512.2 | + | 224934 | 0.66 | 0.814021 |
Target: 5'- gGACCGGGucCGU-GCCGGuGuCGcUCGGCu -3' miRNA: 3'- -CUGGCCU--GCAgCGGCCcCuGC-AGCCG- -5' |
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8946 | 5' | -62.1 | NC_002512.2 | + | 226390 | 0.66 | 0.814021 |
Target: 5'- gGGCCGacGACGgCGCCGGGaccCGUCGcGUc -3' miRNA: 3'- -CUGGC--CUGCaGCGGCCCcu-GCAGC-CG- -5' |
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8946 | 5' | -62.1 | NC_002512.2 | + | 155380 | 0.66 | 0.814021 |
Target: 5'- -uCgGGGCGgcggCGCCGGcGGGCGaucgCGGa -3' miRNA: 3'- cuGgCCUGCa---GCGGCC-CCUGCa---GCCg -5' |
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8946 | 5' | -62.1 | NC_002512.2 | + | 13400 | 0.66 | 0.814021 |
Target: 5'- uACCuGACG-CGCUGcgccucccuguGGGACGcCGGCu -3' miRNA: 3'- cUGGcCUGCaGCGGC-----------CCCUGCaGCCG- -5' |
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8946 | 5' | -62.1 | NC_002512.2 | + | 128173 | 0.66 | 0.814021 |
Target: 5'- aGCCcggGGACGaggUCGCCGagcGGGcCGcCGGCg -3' miRNA: 3'- cUGG---CCUGC---AGCGGC---CCCuGCaGCCG- -5' |
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8946 | 5' | -62.1 | NC_002512.2 | + | 52290 | 0.66 | 0.814021 |
Target: 5'- cGCCGaGAuCGauUCGCCGGaGACGcUGGCg -3' miRNA: 3'- cUGGC-CU-GC--AGCGGCCcCUGCaGCCG- -5' |
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8946 | 5' | -62.1 | NC_002512.2 | + | 167128 | 0.66 | 0.814021 |
Target: 5'- -cUCGGGagcugacguaccUGUUGUgGGGGACGuuuUCGGCg -3' miRNA: 3'- cuGGCCU------------GCAGCGgCCCCUGC---AGCCG- -5' |
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8946 | 5' | -62.1 | NC_002512.2 | + | 97787 | 0.66 | 0.813222 |
Target: 5'- cGGCCGaGACGgacgagaccgcUCGCugaacucCGGGGACG-CGGa -3' miRNA: 3'- -CUGGC-CUGC-----------AGCG-------GCCCCUGCaGCCg -5' |
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8946 | 5' | -62.1 | NC_002512.2 | + | 134992 | 0.66 | 0.812422 |
Target: 5'- cGACCGGGacgccuacccguuCGUCcuggaggauucggGCCGGcGGACGgaucucgccgCGGCc -3' miRNA: 3'- -CUGGCCU-------------GCAG-------------CGGCC-CCUGCa---------GCCG- -5' |
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8946 | 5' | -62.1 | NC_002512.2 | + | 201848 | 0.66 | 0.81162 |
Target: 5'- cGGCCGGcaGC-UCGCCuGGGGccugcgguccgaggACGgCGGCg -3' miRNA: 3'- -CUGGCC--UGcAGCGG-CCCC--------------UGCaGCCG- -5' |
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8946 | 5' | -62.1 | NC_002512.2 | + | 82205 | 0.66 | 0.805971 |
Target: 5'- gGGCCGG-CGUCcucCCGGGG-CGggaagCGGg -3' miRNA: 3'- -CUGGCCuGCAGc--GGCCCCuGCa----GCCg -5' |
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8946 | 5' | -62.1 | NC_002512.2 | + | 42065 | 0.66 | 0.805971 |
Target: 5'- -uCCGGACgGUCuggacgaccaggGCCGGGGugGgcaggaaGGUg -3' miRNA: 3'- cuGGCCUG-CAG------------CGGCCCCugCag-----CCG- -5' |
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8946 | 5' | -62.1 | NC_002512.2 | + | 109009 | 0.66 | 0.805971 |
Target: 5'- cGCCGGcgGCGUCGuCCuGcGGACccgCGGCg -3' miRNA: 3'- cUGGCC--UGCAGC-GGcC-CCUGca-GCCG- -5' |
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8946 | 5' | -62.1 | NC_002512.2 | + | 11452 | 0.66 | 0.805971 |
Target: 5'- --gCGGACGgggGCCGGGGAaGg-GGCg -3' miRNA: 3'- cugGCCUGCag-CGGCCCCUgCagCCG- -5' |
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8946 | 5' | -62.1 | NC_002512.2 | + | 2808 | 0.66 | 0.805971 |
Target: 5'- cGGCCGGcgggacccggcGCGggCGCgGGcccGGACGaCGGCg -3' miRNA: 3'- -CUGGCC-----------UGCa-GCGgCC---CCUGCaGCCG- -5' |
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8946 | 5' | -62.1 | NC_002512.2 | + | 229576 | 0.66 | 0.805971 |
Target: 5'- cGGCa-GAgGagGCCGGaGGGCGUgGGCu -3' miRNA: 3'- -CUGgcCUgCagCGGCC-CCUGCAgCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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