miRNA display CGI


Results 1 - 20 of 354 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8946 5' -62.1 NC_002512.2 + 52290 0.66 0.814021
Target:  5'- cGCCGaGAuCGauUCGCCGGaGACGcUGGCg -3'
miRNA:   3'- cUGGC-CU-GC--AGCGGCCcCUGCaGCCG- -5'
8946 5' -62.1 NC_002512.2 + 128173 0.66 0.814021
Target:  5'- aGCCcggGGACGaggUCGCCGagcGGGcCGcCGGCg -3'
miRNA:   3'- cUGG---CCUGC---AGCGGC---CCCuGCaGCCG- -5'
8946 5' -62.1 NC_002512.2 + 13400 0.66 0.814021
Target:  5'- uACCuGACG-CGCUGcgccucccuguGGGACGcCGGCu -3'
miRNA:   3'- cUGGcCUGCaGCGGC-----------CCCUGCaGCCG- -5'
8946 5' -62.1 NC_002512.2 + 155380 0.66 0.814021
Target:  5'- -uCgGGGCGgcggCGCCGGcGGGCGaucgCGGa -3'
miRNA:   3'- cuGgCCUGCa---GCGGCC-CCUGCa---GCCg -5'
8946 5' -62.1 NC_002512.2 + 226390 0.66 0.814021
Target:  5'- gGGCCGacGACGgCGCCGGGaccCGUCGcGUc -3'
miRNA:   3'- -CUGGC--CUGCaGCGGCCCcu-GCAGC-CG- -5'
8946 5' -62.1 NC_002512.2 + 224934 0.66 0.814021
Target:  5'- gGACCGGGucCGU-GCCGGuGuCGcUCGGCu -3'
miRNA:   3'- -CUGGCCU--GCAgCGGCCcCuGC-AGCCG- -5'
8946 5' -62.1 NC_002512.2 + 24206 0.66 0.814021
Target:  5'- cGACaGGACGgugaCGCCGGaGcuguccgaGGCGUCGGg -3'
miRNA:   3'- -CUGgCCUGCa---GCGGCC-C--------CUGCAGCCg -5'
8946 5' -62.1 NC_002512.2 + 84331 0.66 0.814021
Target:  5'- cGCCGcaGCGUCGCCGcguccucgagcGGGAUGcucCGGCc -3'
miRNA:   3'- cUGGCc-UGCAGCGGC-----------CCCUGCa--GCCG- -5'
8946 5' -62.1 NC_002512.2 + 170799 0.66 0.814021
Target:  5'- cGACgGcGGCGaggggagCGaCGGGGGCGgcagCGGCg -3'
miRNA:   3'- -CUGgC-CUGCa------GCgGCCCCUGCa---GCCG- -5'
8946 5' -62.1 NC_002512.2 + 108164 0.66 0.814021
Target:  5'- -uCCGG-CGUCGCCGGcGccuucugcGGCGUUcagGGCg -3'
miRNA:   3'- cuGGCCuGCAGCGGCC-C--------CUGCAG---CCG- -5'
8946 5' -62.1 NC_002512.2 + 167128 0.66 0.814021
Target:  5'- -cUCGGGagcugacguaccUGUUGUgGGGGACGuuuUCGGCg -3'
miRNA:   3'- cuGGCCU------------GCAGCGgCCCCUGC---AGCCG- -5'
8946 5' -62.1 NC_002512.2 + 97787 0.66 0.813222
Target:  5'- cGGCCGaGACGgacgagaccgcUCGCugaacucCGGGGACG-CGGa -3'
miRNA:   3'- -CUGGC-CUGC-----------AGCG-------GCCCCUGCaGCCg -5'
8946 5' -62.1 NC_002512.2 + 134992 0.66 0.812422
Target:  5'- cGACCGGGacgccuacccguuCGUCcuggaggauucggGCCGGcGGACGgaucucgccgCGGCc -3'
miRNA:   3'- -CUGGCCU-------------GCAG-------------CGGCC-CCUGCa---------GCCG- -5'
8946 5' -62.1 NC_002512.2 + 201848 0.66 0.81162
Target:  5'- cGGCCGGcaGC-UCGCCuGGGGccugcgguccgaggACGgCGGCg -3'
miRNA:   3'- -CUGGCC--UGcAGCGG-CCCC--------------UGCaGCCG- -5'
8946 5' -62.1 NC_002512.2 + 42065 0.66 0.805971
Target:  5'- -uCCGGACgGUCuggacgaccaggGCCGGGGugGgcaggaaGGUg -3'
miRNA:   3'- cuGGCCUG-CAG------------CGGCCCCugCag-----CCG- -5'
8946 5' -62.1 NC_002512.2 + 109009 0.66 0.805971
Target:  5'- cGCCGGcgGCGUCGuCCuGcGGACccgCGGCg -3'
miRNA:   3'- cUGGCC--UGCAGC-GGcC-CCUGca-GCCG- -5'
8946 5' -62.1 NC_002512.2 + 82205 0.66 0.805971
Target:  5'- gGGCCGG-CGUCcucCCGGGG-CGggaagCGGg -3'
miRNA:   3'- -CUGGCCuGCAGc--GGCCCCuGCa----GCCg -5'
8946 5' -62.1 NC_002512.2 + 2808 0.66 0.805971
Target:  5'- cGGCCGGcgggacccggcGCGggCGCgGGcccGGACGaCGGCg -3'
miRNA:   3'- -CUGGCC-----------UGCa-GCGgCC---CCUGCaGCCG- -5'
8946 5' -62.1 NC_002512.2 + 229576 0.66 0.805971
Target:  5'- cGGCa-GAgGagGCCGGaGGGCGUgGGCu -3'
miRNA:   3'- -CUGgcCUgCagCGGCC-CCUGCAgCCG- -5'
8946 5' -62.1 NC_002512.2 + 11452 0.66 0.805971
Target:  5'- --gCGGACGgggGCCGGGGAaGg-GGCg -3'
miRNA:   3'- cugGCCUGCag-CGGCCCCUgCagCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.