miRNA display CGI


Results 41 - 60 of 354 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8946 5' -62.1 NC_002512.2 + 217764 0.76 0.280083
Target:  5'- -cCCGGGCccguccccGUCGCCGGGGuCG-CGGCc -3'
miRNA:   3'- cuGGCCUG--------CAGCGGCCCCuGCaGCCG- -5'
8946 5' -62.1 NC_002512.2 + 217581 0.75 0.317508
Target:  5'- aGCCGGuccggcgGCGcCGCCucGGGGGuCGUCGGCg -3'
miRNA:   3'- cUGGCC-------UGCaGCGG--CCCCU-GCAGCCG- -5'
8946 5' -62.1 NC_002512.2 + 217293 0.71 0.524548
Target:  5'- --gCGGACcgcgCGCCGGGaGAUGaUCGGCu -3'
miRNA:   3'- cugGCCUGca--GCGGCCC-CUGC-AGCCG- -5'
8946 5' -62.1 NC_002512.2 + 216284 0.73 0.413518
Target:  5'- aGCuCGGuCGUCGaguucCCGGGGACGUgGGUc -3'
miRNA:   3'- cUG-GCCuGCAGC-----GGCCCCUGCAgCCG- -5'
8946 5' -62.1 NC_002512.2 + 214411 0.66 0.784437
Target:  5'- gGGCCGGAgCG-CGCCGcgcccgaGGAccgcguccccgucuaCGUCGGCg -3'
miRNA:   3'- -CUGGCCU-GCaGCGGCc------CCU---------------GCAGCCG- -5'
8946 5' -62.1 NC_002512.2 + 212987 0.67 0.728371
Target:  5'- cGACCucauCGUCGCCGcGGcCGUCGGg -3'
miRNA:   3'- -CUGGccu-GCAGCGGCcCCuGCAGCCg -5'
8946 5' -62.1 NC_002512.2 + 211759 0.68 0.673172
Target:  5'- -cCCGGGCGcUGCgGGaGGACGUggaGGCc -3'
miRNA:   3'- cuGGCCUGCaGCGgCC-CCUGCAg--CCG- -5'
8946 5' -62.1 NC_002512.2 + 211334 0.68 0.691758
Target:  5'- -uCCGGGCccgggCGCUGGGGgACGcgcgCGGCc -3'
miRNA:   3'- cuGGCCUGca---GCGGCCCC-UGCa---GCCG- -5'
8946 5' -62.1 NC_002512.2 + 210030 0.67 0.728371
Target:  5'- aGCCGuacCGUCGCgccuuccgcucCGGGGACGUCGa- -3'
miRNA:   3'- cUGGCcu-GCAGCG-----------GCCCCUGCAGCcg -5'
8946 5' -62.1 NC_002512.2 + 209128 0.67 0.746287
Target:  5'- -uCCGGgacuGCGUCGUgGGaGACGaCGGCg -3'
miRNA:   3'- cuGGCC----UGCAGCGgCCcCUGCaGCCG- -5'
8946 5' -62.1 NC_002512.2 + 208422 0.66 0.786964
Target:  5'- --aCGGGCGccgcucccggCGCCGGcccccgaucgagucGGACGUCGGg -3'
miRNA:   3'- cugGCCUGCa---------GCGGCC--------------CCUGCAGCCg -5'
8946 5' -62.1 NC_002512.2 + 207175 0.67 0.755122
Target:  5'- aGCUGuuGAUGUgcCGCCGGGGcgacGCGUUGGUc -3'
miRNA:   3'- cUGGC--CUGCA--GCGGCCCC----UGCAGCCG- -5'
8946 5' -62.1 NC_002512.2 + 204802 0.75 0.324213
Target:  5'- -cCCGGgagguccGCGUC-CCGGGGGCG-CGGCg -3'
miRNA:   3'- cuGGCC-------UGCAGcGGCCCCUGCaGCCG- -5'
8946 5' -62.1 NC_002512.2 + 204645 0.75 0.298659
Target:  5'- gGACCgGGACGgcgacgCGCgGGGGAuCGcCGGCg -3'
miRNA:   3'- -CUGG-CCUGCa-----GCGgCCCCU-GCaGCCG- -5'
8946 5' -62.1 NC_002512.2 + 204067 0.68 0.691758
Target:  5'- cGACgUGGACGUCGUCGgcGGGAUGgucuacgCGGa -3'
miRNA:   3'- -CUG-GCCUGCAGCGGC--CCCUGCa------GCCg -5'
8946 5' -62.1 NC_002512.2 + 202134 0.66 0.781052
Target:  5'- cGCCGGucuCGgccgcCGCCGcGGGGCGggUGGUc -3'
miRNA:   3'- cUGGCCu--GCa----GCGGC-CCCUGCa-GCCG- -5'
8946 5' -62.1 NC_002512.2 + 201848 0.66 0.81162
Target:  5'- cGGCCGGcaGC-UCGCCuGGGGccugcgguccgaggACGgCGGCg -3'
miRNA:   3'- -CUGGCC--UGcAGCGG-CCCC--------------UGCaGCCG- -5'
8946 5' -62.1 NC_002512.2 + 201709 0.66 0.762125
Target:  5'- gGAUCGGcggcggcgucguCGUCGCgGGGGgagACGaCGGCu -3'
miRNA:   3'- -CUGGCCu-----------GCAGCGgCCCC---UGCaGCCG- -5'
8946 5' -62.1 NC_002512.2 + 201331 0.66 0.797788
Target:  5'- uGCCGcGACGUCagcgugGCCGacaucGGGCGgCGGCg -3'
miRNA:   3'- cUGGC-CUGCAG------CGGCc----CCUGCaGCCG- -5'
8946 5' -62.1 NC_002512.2 + 200823 0.67 0.728371
Target:  5'- cGGCaUGGACG-CGaaggucagCGGGGGCG-CGGCg -3'
miRNA:   3'- -CUG-GCCUGCaGCg-------GCCCCUGCaGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.