Results 41 - 60 of 354 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8946 | 5' | -62.1 | NC_002512.2 | + | 177181 | 0.66 | 0.763866 |
Target: 5'- -cCCccGCGUCGuUCGGGGACGUCGu- -3' miRNA: 3'- cuGGccUGCAGC-GGCCCCUGCAGCcg -5' |
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8946 | 5' | -62.1 | NC_002512.2 | + | 208422 | 0.66 | 0.786964 |
Target: 5'- --aCGGGCGccgcucccggCGCCGGcccccgaucgagucGGACGUCGGg -3' miRNA: 3'- cugGCCUGCa---------GCGGCC--------------CCUGCAGCCg -5' |
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8946 | 5' | -62.1 | NC_002512.2 | + | 170799 | 0.66 | 0.814021 |
Target: 5'- cGACgGcGGCGaggggagCGaCGGGGGCGgcagCGGCg -3' miRNA: 3'- -CUGgC-CUGCa------GCgGCCCCUGCa---GCCG- -5' |
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8946 | 5' | -62.1 | NC_002512.2 | + | 189652 | 0.66 | 0.763866 |
Target: 5'- -uCgGGACG-CGCCGacaccGGCGUCGGCc -3' miRNA: 3'- cuGgCCUGCaGCGGCcc---CUGCAGCCG- -5' |
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8946 | 5' | -62.1 | NC_002512.2 | + | 224934 | 0.66 | 0.814021 |
Target: 5'- gGACCGGGucCGU-GCCGGuGuCGcUCGGCu -3' miRNA: 3'- -CUGGCCU--GCAgCGGCCcCuGC-AGCCG- -5' |
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8946 | 5' | -62.1 | NC_002512.2 | + | 200823 | 0.67 | 0.728371 |
Target: 5'- cGGCaUGGACG-CGaaggucagCGGGGGCG-CGGCg -3' miRNA: 3'- -CUG-GCCUGCaGCg-------GCCCCUGCaGCCG- -5' |
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8946 | 5' | -62.1 | NC_002512.2 | + | 97787 | 0.66 | 0.813222 |
Target: 5'- cGGCCGaGACGgacgagaccgcUCGCugaacucCGGGGACG-CGGa -3' miRNA: 3'- -CUGGC-CUGC-----------AGCG-------GCCCCUGCaGCCg -5' |
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8946 | 5' | -62.1 | NC_002512.2 | + | 150036 | 0.67 | 0.737368 |
Target: 5'- ---aGGACGaggggGCCGGGGACGaCGGg -3' miRNA: 3'- cuggCCUGCag---CGGCCCCUGCaGCCg -5' |
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8946 | 5' | -62.1 | NC_002512.2 | + | 143684 | 0.67 | 0.737368 |
Target: 5'- aGCCGGGCGgggUGUCGGGcACGgagGGCc -3' miRNA: 3'- cUGGCCUGCa--GCGGCCCcUGCag-CCG- -5' |
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8946 | 5' | -62.1 | NC_002512.2 | + | 209128 | 0.67 | 0.746287 |
Target: 5'- -uCCGGgacuGCGUCGUgGGaGACGaCGGCg -3' miRNA: 3'- cuGGCC----UGCAGCGgCCcCUGCaGCCG- -5' |
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8946 | 5' | -62.1 | NC_002512.2 | + | 122735 | 0.67 | 0.755122 |
Target: 5'- -cCCGGGCGgaaacgCGCUgaGGGGGCGccCGGg -3' miRNA: 3'- cuGGCCUGCa-----GCGG--CCCCUGCa-GCCg -5' |
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8946 | 5' | -62.1 | NC_002512.2 | + | 221299 | 0.67 | 0.755122 |
Target: 5'- aGGCCGGG-GUCGgCGGGGAg--CGGg -3' miRNA: 3'- -CUGGCCUgCAGCgGCCCCUgcaGCCg -5' |
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8946 | 5' | -62.1 | NC_002512.2 | + | 201709 | 0.66 | 0.762125 |
Target: 5'- gGAUCGGcggcggcgucguCGUCGCgGGGGgagACGaCGGCu -3' miRNA: 3'- -CUGGCCu-----------GCAGCGgCCCC---UGCaGCCG- -5' |
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8946 | 5' | -62.1 | NC_002512.2 | + | 131335 | 0.66 | 0.763866 |
Target: 5'- cGCCGGauccGCGgaaCGCCGGGcGAgGUcccagcCGGCg -3' miRNA: 3'- cUGGCC----UGCa--GCGGCCC-CUgCA------GCCG- -5' |
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8946 | 5' | -62.1 | NC_002512.2 | + | 76105 | 0.66 | 0.772512 |
Target: 5'- aGCUGaGGCGggggCGCCGGGGugGugUCGa- -3' miRNA: 3'- cUGGC-CUGCa---GCGGCCCCugC--AGCcg -5' |
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8946 | 5' | -62.1 | NC_002512.2 | + | 101887 | 0.66 | 0.781052 |
Target: 5'- --gCGGGCGaaaGCgCGGGGACGccgacgggggCGGCg -3' miRNA: 3'- cugGCCUGCag-CG-GCCCCUGCa---------GCCG- -5' |
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8946 | 5' | -62.1 | NC_002512.2 | + | 156959 | 0.66 | 0.781052 |
Target: 5'- -cCCGGcCGuUCGCC---GACGUCGGCa -3' miRNA: 3'- cuGGCCuGC-AGCGGcccCUGCAGCCG- -5' |
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8946 | 5' | -62.1 | NC_002512.2 | + | 117004 | 0.66 | 0.78948 |
Target: 5'- cGACC-GACGagaaCGCCGGgccggaGGACG-CGGCc -3' miRNA: 3'- -CUGGcCUGCa---GCGGCC------CCUGCaGCCG- -5' |
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8946 | 5' | -62.1 | NC_002512.2 | + | 165705 | 0.66 | 0.797788 |
Target: 5'- cGugCGucugcuuCGUCGUCGGGGG-GUCGGg -3' miRNA: 3'- -CugGCcu-----GCAGCGGCCCCUgCAGCCg -5' |
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8946 | 5' | -62.1 | NC_002512.2 | + | 193870 | 0.66 | 0.797788 |
Target: 5'- cAUCGGACG-CGgCGGuGGACGacgCGGg -3' miRNA: 3'- cUGGCCUGCaGCgGCC-CCUGCa--GCCg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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