Results 41 - 60 of 401 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8949 | 3' | -64.4 | NC_002512.2 | + | 119942 | 0.66 | 0.62733 |
Target: 5'- uCGCCcccGCaCGCGGUggacuucguggcgcuGGGGCCGaacgcgcGCGACg -3' miRNA: 3'- uGCGGa--UG-GCGCCG---------------CCCCGGC-------UGCUG- -5' |
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8949 | 3' | -64.4 | NC_002512.2 | + | 191066 | 0.66 | 0.651741 |
Target: 5'- cGCGCCUGgCGCuGGCugugcggcaagugGGGGUgGAUGGu -3' miRNA: 3'- -UGCGGAUgGCG-CCG-------------CCCCGgCUGCUg -5' |
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8949 | 3' | -64.4 | NC_002512.2 | + | 146092 | 0.66 | 0.671398 |
Target: 5'- cGCGCCcgaCGCGGUccucGGcGGCggCGGCGGCg -3' miRNA: 3'- -UGCGGaugGCGCCG----CC-CCG--GCUGCUG- -5' |
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8949 | 3' | -64.4 | NC_002512.2 | + | 117100 | 0.66 | 0.632966 |
Target: 5'- cCGCCcuggACCcggcacaGCGGCacGGGGCCccgucGGCGGCg -3' miRNA: 3'- uGCGGa---UGG-------CGCCG--CCCCGG-----CUGCUG- -5' |
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8949 | 3' | -64.4 | NC_002512.2 | + | 151334 | 0.66 | 0.671398 |
Target: 5'- cCGCCc-UCGCGGCccGGCCGGCGcCa -3' miRNA: 3'- uGCGGauGGCGCCGccCCGGCUGCuG- -5' |
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8949 | 3' | -64.4 | NC_002512.2 | + | 120256 | 0.67 | 0.59639 |
Target: 5'- -gGCCUAcCCGCGGgacCGccGGCUGAUGACg -3' miRNA: 3'- ugCGGAU-GGCGCC---GCc-CCGGCUGCUG- -5' |
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8949 | 3' | -64.4 | NC_002512.2 | + | 217581 | 0.66 | 0.671398 |
Target: 5'- -aGCCgguCCgGCGGCgccgccucgGGGGUCGuCGGCg -3' miRNA: 3'- ugCGGau-GG-CGCCG---------CCCCGGCuGCUG- -5' |
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8949 | 3' | -64.4 | NC_002512.2 | + | 210041 | 0.67 | 0.59639 |
Target: 5'- cGCGCCUuCCGCucCGGGGaCGuCGACc -3' miRNA: 3'- -UGCGGAuGGCGccGCCCCgGCuGCUG- -5' |
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8949 | 3' | -64.4 | NC_002512.2 | + | 100788 | 0.67 | 0.600132 |
Target: 5'- cCGCCcGCCGCGacgccgcccguccuCGGGGUCGACcugGACg -3' miRNA: 3'- uGCGGaUGGCGCc-------------GCCCCGGCUG---CUG- -5' |
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8949 | 3' | -64.4 | NC_002512.2 | + | 227093 | 0.67 | 0.60575 |
Target: 5'- cCGCCgGCCGcCGGCcGGGUCGGgcucaGACg -3' miRNA: 3'- uGCGGaUGGC-GCCGcCCCGGCUg----CUG- -5' |
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8949 | 3' | -64.4 | NC_002512.2 | + | 150289 | 0.67 | 0.614188 |
Target: 5'- gGCG-CUGCCGCccgcgaagaGGCGGaGGagcgagaCCGGCGGCg -3' miRNA: 3'- -UGCgGAUGGCG---------CCGCC-CC-------GGCUGCUG- -5' |
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8949 | 3' | -64.4 | NC_002512.2 | + | 153364 | 0.67 | 0.615126 |
Target: 5'- cCGCUggGCUG-GGCGGcGGCUGGCGGu -3' miRNA: 3'- uGCGGa-UGGCgCCGCC-CCGGCUGCUg -5' |
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8949 | 3' | -64.4 | NC_002512.2 | + | 95107 | 0.66 | 0.624513 |
Target: 5'- -aGCUcGgCGaCGGCGGGcccGCCGACGAa -3' miRNA: 3'- ugCGGaUgGC-GCCGCCC---CGGCUGCUg -5' |
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8949 | 3' | -64.4 | NC_002512.2 | + | 132446 | 0.66 | 0.633905 |
Target: 5'- uGCGCUccCCgGCGGCGGGuCCGGgGAg -3' miRNA: 3'- -UGCGGauGG-CGCCGCCCcGGCUgCUg -5' |
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8949 | 3' | -64.4 | NC_002512.2 | + | 193375 | 0.66 | 0.633905 |
Target: 5'- uCGUC-GCCGCgGGCGGGGaCGACa-- -3' miRNA: 3'- uGCGGaUGGCG-CCGCCCCgGCUGcug -5' |
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8949 | 3' | -64.4 | NC_002512.2 | + | 202132 | 0.66 | 0.633905 |
Target: 5'- gGCGCCggucucgGCCGCcgccGCGGGGCgGGUGGu -3' miRNA: 3'- -UGCGGa------UGGCGc---CGCCCCGgCUGCUg -5' |
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8949 | 3' | -64.4 | NC_002512.2 | + | 148076 | 0.66 | 0.643296 |
Target: 5'- cGCGCCgcggucguCCGUcccccGGCGGcGGC-GGCGGCg -3' miRNA: 3'- -UGCGGau------GGCG-----CCGCC-CCGgCUGCUG- -5' |
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8949 | 3' | -64.4 | NC_002512.2 | + | 221250 | 0.66 | 0.652679 |
Target: 5'- -gGCCgGCCGCGGCGGaaGUCgGGgGACg -3' miRNA: 3'- ugCGGaUGGCGCCGCCc-CGG-CUgCUG- -5' |
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8949 | 3' | -64.4 | NC_002512.2 | + | 147607 | 0.66 | 0.661112 |
Target: 5'- uCGCCUcgacccgACCcuCGaCGGGGgCGACGACg -3' miRNA: 3'- uGCGGA-------UGGc-GCcGCCCCgGCUGCUG- -5' |
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8949 | 3' | -64.4 | NC_002512.2 | + | 213637 | 0.66 | 0.662048 |
Target: 5'- -gGCC-GCCGCgGGCGacGGCgaCGACGACg -3' miRNA: 3'- ugCGGaUGGCG-CCGCc-CCG--GCUGCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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