miRNA display CGI


Results 1 - 20 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8950 5' -49.1 NC_002512.2 + 214966 0.65 0.999918
Target:  5'- cGggGUccGGAUCCagaccGACGccgaccucgggauGCCCGUCGg -3'
miRNA:   3'- -CuuUAuaCUUAGGc----CUGC-------------UGGGCAGC- -5'
8950 5' -49.1 NC_002512.2 + 205233 0.66 0.999897
Target:  5'- gGAGAUcgGGA--CGGACGACgUCGUCu -3'
miRNA:   3'- -CUUUAuaCUUagGCCUGCUG-GGCAGc -5'
8950 5' -49.1 NC_002512.2 + 175513 0.66 0.999897
Target:  5'- cGGGAcGUGGAcCCGGGCuGACCCcgcucGUCa -3'
miRNA:   3'- -CUUUaUACUUaGGCCUG-CUGGG-----CAGc -5'
8950 5' -49.1 NC_002512.2 + 131644 0.66 0.999897
Target:  5'- gGAAGUAcgGggUCCGcGACGAgagcaCCCGg-- -3'
miRNA:   3'- -CUUUAUa-CuuAGGC-CUGCU-----GGGCagc -5'
8950 5' -49.1 NC_002512.2 + 127848 0.66 0.999897
Target:  5'- ------gGAGUCCGGAgCGGgauCCCGUgGg -3'
miRNA:   3'- cuuuauaCUUAGGCCU-GCU---GGGCAgC- -5'
8950 5' -49.1 NC_002512.2 + 207181 0.66 0.999897
Target:  5'- -uGAUGUGccgCCgGGGCGACgCGUUGg -3'
miRNA:   3'- cuUUAUACuuaGG-CCUGCUGgGCAGC- -5'
8950 5' -49.1 NC_002512.2 + 124877 0.66 0.999897
Target:  5'- ------aGAA-CCGGGCGGcggcCCCGUCa -3'
miRNA:   3'- cuuuauaCUUaGGCCUGCU----GGGCAGc -5'
8950 5' -49.1 NC_002512.2 + 153106 0.66 0.999897
Target:  5'- -----cUGGAUCCgGGACGAUUCGguggCGa -3'
miRNA:   3'- cuuuauACUUAGG-CCUGCUGGGCa---GC- -5'
8950 5' -49.1 NC_002512.2 + 224044 0.66 0.999897
Target:  5'- ------cGGGgccgCCggGGACGACUCGUCGg -3'
miRNA:   3'- cuuuauaCUUa---GG--CCUGCUGGGCAGC- -5'
8950 5' -49.1 NC_002512.2 + 175706 0.66 0.999897
Target:  5'- cGGGAcGUGGAcCCGGGCuGACCCcgcucGUCa -3'
miRNA:   3'- -CUUUaUACUUaGGCCUG-CUGGG-----CAGc -5'
8950 5' -49.1 NC_002512.2 + 194393 0.66 0.999867
Target:  5'- ------aGGAcuUCUGGACGGCCgaCGUCGu -3'
miRNA:   3'- cuuuauaCUU--AGGCCUGCUGG--GCAGC- -5'
8950 5' -49.1 NC_002512.2 + 131301 0.66 0.999867
Target:  5'- ----cGUGcagCgCGGACGACCCGcCGc -3'
miRNA:   3'- cuuuaUACuuaG-GCCUGCUGGGCaGC- -5'
8950 5' -49.1 NC_002512.2 + 222753 0.66 0.999867
Target:  5'- cAAAUGUGGAcCCGaGgGACCUGUCu -3'
miRNA:   3'- cUUUAUACUUaGGCcUgCUGGGCAGc -5'
8950 5' -49.1 NC_002512.2 + 2244 0.66 0.999867
Target:  5'- ------cGGAcCCGGGCGcUCCGUCGc -3'
miRNA:   3'- cuuuauaCUUaGGCCUGCuGGGCAGC- -5'
8950 5' -49.1 NC_002512.2 + 14929 0.66 0.99983
Target:  5'- -----cUGGAUCCGGAC--CCCGUgCGu -3'
miRNA:   3'- cuuuauACUUAGGCCUGcuGGGCA-GC- -5'
8950 5' -49.1 NC_002512.2 + 49626 0.66 0.99983
Target:  5'- ----cAUGAggaucGUCCGGGCGAgCCGg-- -3'
miRNA:   3'- cuuuaUACU-----UAGGCCUGCUgGGCagc -5'
8950 5' -49.1 NC_002512.2 + 75056 0.66 0.99983
Target:  5'- gGAGGgcggggGAGaCCGGGCGGCgaCGUCGa -3'
miRNA:   3'- -CUUUaua---CUUaGGCCUGCUGg-GCAGC- -5'
8950 5' -49.1 NC_002512.2 + 46661 0.66 0.99983
Target:  5'- uGGAAg--GggUCCucgGGGuCGAuCCCGUCGa -3'
miRNA:   3'- -CUUUauaCuuAGG---CCU-GCU-GGGCAGC- -5'
8950 5' -49.1 NC_002512.2 + 75195 0.66 0.99983
Target:  5'- ------cGAcgCCGGACGGCCgcUCGg -3'
miRNA:   3'- cuuuauaCUuaGGCCUGCUGGgcAGC- -5'
8950 5' -49.1 NC_002512.2 + 5865 0.66 0.999826
Target:  5'- --cGUcgGAGUcCCGGGCGucguccgACUCGUCGc -3'
miRNA:   3'- cuuUAuaCUUA-GGCCUGC-------UGGGCAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.