Results 1 - 20 of 90 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
8950 | 5' | -49.1 | NC_002512.2 | + | 214966 | 0.65 | 0.999918 |
Target: 5'- cGggGUccGGAUCCagaccGACGccgaccucgggauGCCCGUCGg -3' miRNA: 3'- -CuuUAuaCUUAGGc----CUGC-------------UGGGCAGC- -5' |
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8950 | 5' | -49.1 | NC_002512.2 | + | 175513 | 0.66 | 0.999897 |
Target: 5'- cGGGAcGUGGAcCCGGGCuGACCCcgcucGUCa -3' miRNA: 3'- -CUUUaUACUUaGGCCUG-CUGGG-----CAGc -5' |
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8950 | 5' | -49.1 | NC_002512.2 | + | 131644 | 0.66 | 0.999897 |
Target: 5'- gGAAGUAcgGggUCCGcGACGAgagcaCCCGg-- -3' miRNA: 3'- -CUUUAUa-CuuAGGC-CUGCU-----GGGCagc -5' |
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8950 | 5' | -49.1 | NC_002512.2 | + | 127848 | 0.66 | 0.999897 |
Target: 5'- ------gGAGUCCGGAgCGGgauCCCGUgGg -3' miRNA: 3'- cuuuauaCUUAGGCCU-GCU---GGGCAgC- -5' |
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8950 | 5' | -49.1 | NC_002512.2 | + | 175706 | 0.66 | 0.999897 |
Target: 5'- cGGGAcGUGGAcCCGGGCuGACCCcgcucGUCa -3' miRNA: 3'- -CUUUaUACUUaGGCCUG-CUGGG-----CAGc -5' |
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8950 | 5' | -49.1 | NC_002512.2 | + | 207181 | 0.66 | 0.999897 |
Target: 5'- -uGAUGUGccgCCgGGGCGACgCGUUGg -3' miRNA: 3'- cuUUAUACuuaGG-CCUGCUGgGCAGC- -5' |
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8950 | 5' | -49.1 | NC_002512.2 | + | 205233 | 0.66 | 0.999897 |
Target: 5'- gGAGAUcgGGA--CGGACGACgUCGUCu -3' miRNA: 3'- -CUUUAuaCUUagGCCUGCUG-GGCAGc -5' |
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8950 | 5' | -49.1 | NC_002512.2 | + | 224044 | 0.66 | 0.999897 |
Target: 5'- ------cGGGgccgCCggGGACGACUCGUCGg -3' miRNA: 3'- cuuuauaCUUa---GG--CCUGCUGGGCAGC- -5' |
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8950 | 5' | -49.1 | NC_002512.2 | + | 124877 | 0.66 | 0.999897 |
Target: 5'- ------aGAA-CCGGGCGGcggcCCCGUCa -3' miRNA: 3'- cuuuauaCUUaGGCCUGCU----GGGCAGc -5' |
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8950 | 5' | -49.1 | NC_002512.2 | + | 153106 | 0.66 | 0.999897 |
Target: 5'- -----cUGGAUCCgGGACGAUUCGguggCGa -3' miRNA: 3'- cuuuauACUUAGG-CCUGCUGGGCa---GC- -5' |
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8950 | 5' | -49.1 | NC_002512.2 | + | 194393 | 0.66 | 0.999867 |
Target: 5'- ------aGGAcuUCUGGACGGCCgaCGUCGu -3' miRNA: 3'- cuuuauaCUU--AGGCCUGCUGG--GCAGC- -5' |
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8950 | 5' | -49.1 | NC_002512.2 | + | 131301 | 0.66 | 0.999867 |
Target: 5'- ----cGUGcagCgCGGACGACCCGcCGc -3' miRNA: 3'- cuuuaUACuuaG-GCCUGCUGGGCaGC- -5' |
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8950 | 5' | -49.1 | NC_002512.2 | + | 2244 | 0.66 | 0.999867 |
Target: 5'- ------cGGAcCCGGGCGcUCCGUCGc -3' miRNA: 3'- cuuuauaCUUaGGCCUGCuGGGCAGC- -5' |
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8950 | 5' | -49.1 | NC_002512.2 | + | 222753 | 0.66 | 0.999867 |
Target: 5'- cAAAUGUGGAcCCGaGgGACCUGUCu -3' miRNA: 3'- cUUUAUACUUaGGCcUgCUGGGCAGc -5' |
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8950 | 5' | -49.1 | NC_002512.2 | + | 75195 | 0.66 | 0.99983 |
Target: 5'- ------cGAcgCCGGACGGCCgcUCGg -3' miRNA: 3'- cuuuauaCUuaGGCCUGCUGGgcAGC- -5' |
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8950 | 5' | -49.1 | NC_002512.2 | + | 46661 | 0.66 | 0.99983 |
Target: 5'- uGGAAg--GggUCCucgGGGuCGAuCCCGUCGa -3' miRNA: 3'- -CUUUauaCuuAGG---CCU-GCU-GGGCAGC- -5' |
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8950 | 5' | -49.1 | NC_002512.2 | + | 75056 | 0.66 | 0.99983 |
Target: 5'- gGAGGgcggggGAGaCCGGGCGGCgaCGUCGa -3' miRNA: 3'- -CUUUaua---CUUaGGCCUGCUGg-GCAGC- -5' |
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8950 | 5' | -49.1 | NC_002512.2 | + | 49626 | 0.66 | 0.99983 |
Target: 5'- ----cAUGAggaucGUCCGGGCGAgCCGg-- -3' miRNA: 3'- cuuuaUACU-----UAGGCCUGCUgGGCagc -5' |
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8950 | 5' | -49.1 | NC_002512.2 | + | 14929 | 0.66 | 0.99983 |
Target: 5'- -----cUGGAUCCGGAC--CCCGUgCGu -3' miRNA: 3'- cuuuauACUUAGGCCUGcuGGGCA-GC- -5' |
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8950 | 5' | -49.1 | NC_002512.2 | + | 5865 | 0.66 | 0.999826 |
Target: 5'- --cGUcgGAGUcCCGGGCGucguccgACUCGUCGc -3' miRNA: 3'- cuuUAuaCUUA-GGCCUGC-------UGGGCAGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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