miRNA display CGI


Results 1 - 20 of 143 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8952 3' -57.1 NC_002512.2 + 105012 0.66 0.943957
Target:  5'- -gCACGGGCGCGucgagcCCCGcgcaGGUCauGUAGCAg -3'
miRNA:   3'- ugGUGCUUGCGC------GGGC----UCAG--CAUCGU- -5'
8952 3' -57.1 NC_002512.2 + 123761 0.66 0.943957
Target:  5'- aGCCugACGAACGgcccgguguucCGCCCgggcGAGUCGaAGCGg -3'
miRNA:   3'- -UGG--UGCUUGC-----------GCGGG----CUCAGCaUCGU- -5'
8952 3' -57.1 NC_002512.2 + 220655 0.66 0.943957
Target:  5'- -gCGCGAGCGCcaccugGCCCGccgcGUCGUgcugGGCGa -3'
miRNA:   3'- ugGUGCUUGCG------CGGGCu---CAGCA----UCGU- -5'
8952 3' -57.1 NC_002512.2 + 5495 0.66 0.943957
Target:  5'- gGCgCGCGucCGCGCCgGGGUCGcgAGg- -3'
miRNA:   3'- -UG-GUGCuuGCGCGGgCUCAGCa-UCgu -5'
8952 3' -57.1 NC_002512.2 + 106224 0.66 0.943957
Target:  5'- gGCCAUGGcggcGCGCGCgCGGGaaccgCGgcGCGc -3'
miRNA:   3'- -UGGUGCU----UGCGCGgGCUCa----GCauCGU- -5'
8952 3' -57.1 NC_002512.2 + 155080 0.66 0.943957
Target:  5'- cGCCGCugccGgGUGCCCGGG-CGUcAGCAg -3'
miRNA:   3'- -UGGUGcu--UgCGCGGGCUCaGCA-UCGU- -5'
8952 3' -57.1 NC_002512.2 + 108957 0.66 0.943957
Target:  5'- uGCCcguCGggU-CGCCCGGGUcCGUcAGCAg -3'
miRNA:   3'- -UGGu--GCuuGcGCGGGCUCA-GCA-UCGU- -5'
8952 3' -57.1 NC_002512.2 + 219059 0.66 0.943957
Target:  5'- gUCACGAACGC-CgCGAGacaUGUAGCGa -3'
miRNA:   3'- uGGUGCUUGCGcGgGCUCa--GCAUCGU- -5'
8952 3' -57.1 NC_002512.2 + 74635 0.66 0.939519
Target:  5'- cGCCGCGcGACG-GCCCGGGggagaUCGggggAGCu -3'
miRNA:   3'- -UGGUGC-UUGCgCGGGCUC-----AGCa---UCGu -5'
8952 3' -57.1 NC_002512.2 + 67279 0.66 0.939519
Target:  5'- cCCAUG-ACGCGCUgGgcGGUCGagUAGCAg -3'
miRNA:   3'- uGGUGCuUGCGCGGgC--UCAGC--AUCGU- -5'
8952 3' -57.1 NC_002512.2 + 128018 0.66 0.939519
Target:  5'- cCCGCGGcuGCuGCGgCCGGGUCGcucgcugccucUGGCGg -3'
miRNA:   3'- uGGUGCU--UG-CGCgGGCUCAGC-----------AUCGU- -5'
8952 3' -57.1 NC_002512.2 + 216745 0.66 0.939519
Target:  5'- uCCGCGA--GCGCCCG-GUCGaacgAGUg -3'
miRNA:   3'- uGGUGCUugCGCGGGCuCAGCa---UCGu -5'
8952 3' -57.1 NC_002512.2 + 83441 0.66 0.939519
Target:  5'- gGCC-UGAAgUGCGCCCGgacgaAGUCGUgcggGGCGg -3'
miRNA:   3'- -UGGuGCUU-GCGCGGGC-----UCAGCA----UCGU- -5'
8952 3' -57.1 NC_002512.2 + 12271 0.66 0.93675
Target:  5'- gACC-CGuGGCGcCGCCCGAGUCGccgacgacccccgaGGCGg -3'
miRNA:   3'- -UGGuGC-UUGC-GCGGGCUCAGCa-------------UCGU- -5'
8952 3' -57.1 NC_002512.2 + 199221 0.66 0.93675
Target:  5'- gACCGCGccgcccgguagauccGGCGCaGCCCGAuGUCG-AGUc -3'
miRNA:   3'- -UGGUGC---------------UUGCG-CGGGCU-CAGCaUCGu -5'
8952 3' -57.1 NC_002512.2 + 223517 0.66 0.934861
Target:  5'- gACCACGGcggagaacggcACGCGCCCGcGgccCGcGGCc -3'
miRNA:   3'- -UGGUGCU-----------UGCGCGGGCuCa--GCaUCGu -5'
8952 3' -57.1 NC_002512.2 + 113168 0.66 0.934861
Target:  5'- gGCCACGucgGACGUGCCgGGGcugCGUuguuccagAGCGg -3'
miRNA:   3'- -UGGUGC---UUGCGCGGgCUCa--GCA--------UCGU- -5'
8952 3' -57.1 NC_002512.2 + 216808 0.66 0.934861
Target:  5'- uUgACGAugGCGUCgCGGGUCGgguacGGCu -3'
miRNA:   3'- uGgUGCUugCGCGG-GCUCAGCa----UCGu -5'
8952 3' -57.1 NC_002512.2 + 221842 0.66 0.934861
Target:  5'- cCCGCGGGgGCGCCuCGGGaccgggaccucUCGgAGCGg -3'
miRNA:   3'- uGGUGCUUgCGCGG-GCUC-----------AGCaUCGU- -5'
8952 3' -57.1 NC_002512.2 + 95021 0.66 0.934861
Target:  5'- cCC-CGAcgGCGuCGCCCGAGaCGUcGCGc -3'
miRNA:   3'- uGGuGCU--UGC-GCGGGCUCaGCAuCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.