Results 1 - 20 of 143 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
8952 | 3' | -57.1 | NC_002512.2 | + | 219059 | 0.66 | 0.943957 |
Target: 5'- gUCACGAACGC-CgCGAGacaUGUAGCGa -3' miRNA: 3'- uGGUGCUUGCGcGgGCUCa--GCAUCGU- -5' |
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8952 | 3' | -57.1 | NC_002512.2 | + | 220655 | 0.66 | 0.943957 |
Target: 5'- -gCGCGAGCGCcaccugGCCCGccgcGUCGUgcugGGCGa -3' miRNA: 3'- ugGUGCUUGCG------CGGGCu---CAGCA----UCGU- -5' |
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8952 | 3' | -57.1 | NC_002512.2 | + | 5495 | 0.66 | 0.943957 |
Target: 5'- gGCgCGCGucCGCGCCgGGGUCGcgAGg- -3' miRNA: 3'- -UG-GUGCuuGCGCGGgCUCAGCa-UCgu -5' |
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8952 | 3' | -57.1 | NC_002512.2 | + | 106224 | 0.66 | 0.943957 |
Target: 5'- gGCCAUGGcggcGCGCGCgCGGGaaccgCGgcGCGc -3' miRNA: 3'- -UGGUGCU----UGCGCGgGCUCa----GCauCGU- -5' |
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8952 | 3' | -57.1 | NC_002512.2 | + | 155080 | 0.66 | 0.943957 |
Target: 5'- cGCCGCugccGgGUGCCCGGG-CGUcAGCAg -3' miRNA: 3'- -UGGUGcu--UgCGCGGGCUCaGCA-UCGU- -5' |
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8952 | 3' | -57.1 | NC_002512.2 | + | 108957 | 0.66 | 0.943957 |
Target: 5'- uGCCcguCGggU-CGCCCGGGUcCGUcAGCAg -3' miRNA: 3'- -UGGu--GCuuGcGCGGGCUCA-GCA-UCGU- -5' |
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8952 | 3' | -57.1 | NC_002512.2 | + | 123761 | 0.66 | 0.943957 |
Target: 5'- aGCCugACGAACGgcccgguguucCGCCCgggcGAGUCGaAGCGg -3' miRNA: 3'- -UGG--UGCUUGC-----------GCGGG----CUCAGCaUCGU- -5' |
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8952 | 3' | -57.1 | NC_002512.2 | + | 105012 | 0.66 | 0.943957 |
Target: 5'- -gCACGGGCGCGucgagcCCCGcgcaGGUCauGUAGCAg -3' miRNA: 3'- ugGUGCUUGCGC------GGGC----UCAG--CAUCGU- -5' |
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8952 | 3' | -57.1 | NC_002512.2 | + | 74635 | 0.66 | 0.939519 |
Target: 5'- cGCCGCGcGACG-GCCCGGGggagaUCGggggAGCu -3' miRNA: 3'- -UGGUGC-UUGCgCGGGCUC-----AGCa---UCGu -5' |
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8952 | 3' | -57.1 | NC_002512.2 | + | 83441 | 0.66 | 0.939519 |
Target: 5'- gGCC-UGAAgUGCGCCCGgacgaAGUCGUgcggGGCGg -3' miRNA: 3'- -UGGuGCUU-GCGCGGGC-----UCAGCA----UCGU- -5' |
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8952 | 3' | -57.1 | NC_002512.2 | + | 216745 | 0.66 | 0.939519 |
Target: 5'- uCCGCGA--GCGCCCG-GUCGaacgAGUg -3' miRNA: 3'- uGGUGCUugCGCGGGCuCAGCa---UCGu -5' |
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8952 | 3' | -57.1 | NC_002512.2 | + | 67279 | 0.66 | 0.939519 |
Target: 5'- cCCAUG-ACGCGCUgGgcGGUCGagUAGCAg -3' miRNA: 3'- uGGUGCuUGCGCGGgC--UCAGC--AUCGU- -5' |
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8952 | 3' | -57.1 | NC_002512.2 | + | 128018 | 0.66 | 0.939519 |
Target: 5'- cCCGCGGcuGCuGCGgCCGGGUCGcucgcugccucUGGCGg -3' miRNA: 3'- uGGUGCU--UG-CGCgGGCUCAGC-----------AUCGU- -5' |
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8952 | 3' | -57.1 | NC_002512.2 | + | 199221 | 0.66 | 0.93675 |
Target: 5'- gACCGCGccgcccgguagauccGGCGCaGCCCGAuGUCG-AGUc -3' miRNA: 3'- -UGGUGC---------------UUGCG-CGGGCU-CAGCaUCGu -5' |
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8952 | 3' | -57.1 | NC_002512.2 | + | 12271 | 0.66 | 0.93675 |
Target: 5'- gACC-CGuGGCGcCGCCCGAGUCGccgacgacccccgaGGCGg -3' miRNA: 3'- -UGGuGC-UUGC-GCGGGCUCAGCa-------------UCGU- -5' |
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8952 | 3' | -57.1 | NC_002512.2 | + | 113168 | 0.66 | 0.934861 |
Target: 5'- gGCCACGucgGACGUGCCgGGGcugCGUuguuccagAGCGg -3' miRNA: 3'- -UGGUGC---UUGCGCGGgCUCa--GCA--------UCGU- -5' |
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8952 | 3' | -57.1 | NC_002512.2 | + | 216808 | 0.66 | 0.934861 |
Target: 5'- uUgACGAugGCGUCgCGGGUCGgguacGGCu -3' miRNA: 3'- uGgUGCUugCGCGG-GCUCAGCa----UCGu -5' |
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8952 | 3' | -57.1 | NC_002512.2 | + | 221842 | 0.66 | 0.934861 |
Target: 5'- cCCGCGGGgGCGCCuCGGGaccgggaccucUCGgAGCGg -3' miRNA: 3'- uGGUGCUUgCGCGG-GCUC-----------AGCaUCGU- -5' |
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8952 | 3' | -57.1 | NC_002512.2 | + | 95021 | 0.66 | 0.934861 |
Target: 5'- cCC-CGAcgGCGuCGCCCGAGaCGUcGCGc -3' miRNA: 3'- uGGuGCU--UGC-GCGGGCUCaGCAuCGU- -5' |
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8952 | 3' | -57.1 | NC_002512.2 | + | 223517 | 0.66 | 0.934861 |
Target: 5'- gACCACGGcggagaacggcACGCGCCCGcGgccCGcGGCc -3' miRNA: 3'- -UGGUGCU-----------UGCGCGGGCuCa--GCaUCGu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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