Results 1 - 20 of 192 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8952 | 5' | -62.8 | NC_002512.2 | + | 216562 | 0.95 | 0.009398 |
Target: 5'- gAACG-CAGCAUGCGGCGGGCCAGCGAg -3' miRNA: 3'- -UUGCgGUCGUACGCCGCCCGGUCGCU- -5' |
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8952 | 5' | -62.8 | NC_002512.2 | + | 184538 | 0.79 | 0.120463 |
Target: 5'- cGGgGUCAGCcgGCGGCgcGGGCCGGCGGa -3' miRNA: 3'- -UUgCGGUCGuaCGCCG--CCCGGUCGCU- -5' |
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8952 | 5' | -62.8 | NC_002512.2 | + | 10481 | 0.79 | 0.114646 |
Target: 5'- gGGCGUgGGCGUcGCGGCGGGCCgaccAGCGGa -3' miRNA: 3'- -UUGCGgUCGUA-CGCCGCCCGG----UCGCU- -5' |
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8952 | 5' | -62.8 | NC_002512.2 | + | 97196 | 0.78 | 0.132927 |
Target: 5'- cGACGCCcgucuGCG-GCGGCGGGCCGGgCGGg -3' miRNA: 3'- -UUGCGGu----CGUaCGCCGCCCGGUC-GCU- -5' |
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8952 | 5' | -62.8 | NC_002512.2 | + | 179233 | 0.78 | 0.132927 |
Target: 5'- uGCGCCAGCA-GCuGGCGGGCCgugucGGUGAa -3' miRNA: 3'- uUGCGGUCGUaCG-CCGCCCGG-----UCGCU- -5' |
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8952 | 5' | -62.8 | NC_002512.2 | + | 181585 | 0.77 | 0.157629 |
Target: 5'- uGCGgCGGCAgggGCGGCGGGUCcGCGAc -3' miRNA: 3'- uUGCgGUCGUa--CGCCGCCCGGuCGCU- -5' |
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8952 | 5' | -62.8 | NC_002512.2 | + | 157127 | 0.76 | 0.182028 |
Target: 5'- cGGCGUCGGgGgucgGCGGCGGGCCcggGGCGGg -3' miRNA: 3'- -UUGCGGUCgUa---CGCCGCCCGG---UCGCU- -5' |
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8952 | 5' | -62.8 | NC_002512.2 | + | 136208 | 0.75 | 0.209711 |
Target: 5'- cGACGCCGGCggccugGUGCGcGgGGGUCAGCGu -3' miRNA: 3'- -UUGCGGUCG------UACGC-CgCCCGGUCGCu -5' |
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8952 | 5' | -62.8 | NC_002512.2 | + | 204708 | 0.75 | 0.224869 |
Target: 5'- cGACGUCGGCGa-CGGCGGGCCcggGGCGGg -3' miRNA: 3'- -UUGCGGUCGUacGCCGCCCGG---UCGCU- -5' |
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8952 | 5' | -62.8 | NC_002512.2 | + | 120785 | 0.75 | 0.204857 |
Target: 5'- -cCGUCGGCGgggGCGGCGGGaCGGCGGc -3' miRNA: 3'- uuGCGGUCGUa--CGCCGCCCgGUCGCU- -5' |
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8952 | 5' | -62.8 | NC_002512.2 | + | 116716 | 0.74 | 0.269863 |
Target: 5'- cGACGCCGgucGCGUcccgcccggccGCGGCGaGGCCGGCGc -3' miRNA: 3'- -UUGCGGU---CGUA-----------CGCCGC-CCGGUCGCu -5' |
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8952 | 5' | -62.8 | NC_002512.2 | + | 9216 | 0.74 | 0.252192 |
Target: 5'- -uCGcCCAGCAcgacGCGGCGGGCCAGgUGGc -3' miRNA: 3'- uuGC-GGUCGUa---CGCCGCCCGGUC-GCU- -5' |
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8952 | 5' | -62.8 | NC_002512.2 | + | 33498 | 0.74 | 0.243163 |
Target: 5'- cGCGCCAGaCccGCGGCGucccgaagugagcccGGCCGGCGGa -3' miRNA: 3'- uUGCGGUC-GuaCGCCGC---------------CCGGUCGCU- -5' |
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8952 | 5' | -62.8 | NC_002512.2 | + | 220124 | 0.74 | 0.252192 |
Target: 5'- -cCGCCAcGCGggGCGGCGGGuCCGGCu- -3' miRNA: 3'- uuGCGGU-CGUa-CGCCGCCC-GGUCGcu -5' |
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8952 | 5' | -62.8 | NC_002512.2 | + | 101108 | 0.73 | 0.294957 |
Target: 5'- --gGCCAGCGcGCGGCGcGGCguGCGc -3' miRNA: 3'- uugCGGUCGUaCGCCGC-CCGguCGCu -5' |
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8952 | 5' | -62.8 | NC_002512.2 | + | 157085 | 0.73 | 0.301508 |
Target: 5'- -uCGCCGGCGcccaCGGCGGGCCcgucccGGCGAc -3' miRNA: 3'- uuGCGGUCGUac--GCCGCCCGG------UCGCU- -5' |
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8952 | 5' | -62.8 | NC_002512.2 | + | 96529 | 0.73 | 0.308171 |
Target: 5'- cGCGCCGGCgGUGUGaGCcgGGGCCGGgGAu -3' miRNA: 3'- uUGCGGUCG-UACGC-CG--CCCGGUCgCU- -5' |
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8952 | 5' | -62.8 | NC_002512.2 | + | 188646 | 0.73 | 0.30616 |
Target: 5'- gGGCGCCGGCG-GCGGCGGcgGCCcgucguccgaccgcGGCGGu -3' miRNA: 3'- -UUGCGGUCGUaCGCCGCC--CGG--------------UCGCU- -5' |
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8952 | 5' | -62.8 | NC_002512.2 | + | 143552 | 0.73 | 0.294957 |
Target: 5'- cGGCgGCCGcGCGUcuccccGCgGGCGGGCCGGCGGa -3' miRNA: 3'- -UUG-CGGU-CGUA------CG-CCGCCCGGUCGCU- -5' |
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8952 | 5' | -62.8 | NC_002512.2 | + | 155368 | 0.73 | 0.275971 |
Target: 5'- cGGCGCUcgaGGUcgggGCGGCGGcGCCGGCGGg -3' miRNA: 3'- -UUGCGG---UCGua--CGCCGCC-CGGUCGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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