miRNA display CGI


Results 1 - 20 of 192 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8952 5' -62.8 NC_002512.2 + 229539 0.7 0.446838
Target:  5'- gAACGCCGGgGaGCcgGGCGGggcGCCGGCGGa -3'
miRNA:   3'- -UUGCGGUCgUaCG--CCGCC---CGGUCGCU- -5'
8952 5' -62.8 NC_002512.2 + 227934 0.69 0.473144
Target:  5'- cGACGCCGGCGgacgagGCGGgGGaGCgCGGgGGa -3'
miRNA:   3'- -UUGCGGUCGUa-----CGCCgCC-CG-GUCgCU- -5'
8952 5' -62.8 NC_002512.2 + 227651 0.69 0.476711
Target:  5'- gAGCGCCcggguccggaggaagAGCG-GCGGCGccGCCGGCGAc -3'
miRNA:   3'- -UUGCGG---------------UCGUaCGCCGCc-CGGUCGCU- -5'
8952 5' -62.8 NC_002512.2 + 227618 0.68 0.518624
Target:  5'- gAGgGCgGGCGgcgGCGGCGaGGUCAGgCGAc -3'
miRNA:   3'- -UUgCGgUCGUa--CGCCGC-CCGGUC-GCU- -5'
8952 5' -62.8 NC_002512.2 + 227470 0.66 0.671975
Target:  5'- aGAgGCCGGgG-GCGGCcGGCC-GCGAg -3'
miRNA:   3'- -UUgCGGUCgUaCGCCGcCCGGuCGCU- -5'
8952 5' -62.8 NC_002512.2 + 227304 0.72 0.314945
Target:  5'- gAGCGCCAGCAUGgGGgagaCGcGCCGGCGc -3'
miRNA:   3'- -UUGCGGUCGUACgCC----GCcCGGUCGCu -5'
8952 5' -62.8 NC_002512.2 + 226686 0.69 0.490202
Target:  5'- gAGCGCCGggccgucGCccGCGGCGGcGUCgAGCGAc -3'
miRNA:   3'- -UUGCGGU-------CGuaCGCCGCC-CGG-UCGCU- -5'
8952 5' -62.8 NC_002512.2 + 226198 0.67 0.604203
Target:  5'- cGCGCCguuAGCGcGCGGcCGGGCCAucacCGGg -3'
miRNA:   3'- uUGCGG---UCGUaCGCC-GCCCGGUc---GCU- -5'
8952 5' -62.8 NC_002512.2 + 224805 0.66 0.643932
Target:  5'- cGACGCCGGCGacgacgaccaacgccGCgGGCGGGCUGGaCGc -3'
miRNA:   3'- -UUGCGGUCGUa--------------CG-CCGCCCGGUC-GCu -5'
8952 5' -62.8 NC_002512.2 + 222532 0.67 0.612912
Target:  5'- --gGCCGcCGUcGCGGUGGGCCgggcuacGGCGAc -3'
miRNA:   3'- uugCGGUcGUA-CGCCGCCCGG-------UCGCU- -5'
8952 5' -62.8 NC_002512.2 + 222404 0.72 0.350495
Target:  5'- gAGCGCCgcGGCuucgGCGG-GGGCCGGCa- -3'
miRNA:   3'- -UUGCGG--UCGua--CGCCgCCCGGUCGcu -5'
8952 5' -62.8 NC_002512.2 + 221398 0.7 0.42976
Target:  5'- gGGCGCgGGCGgggagGCGGCGGGUCugucCGAc -3'
miRNA:   3'- -UUGCGgUCGUa----CGCCGCCCGGuc--GCU- -5'
8952 5' -62.8 NC_002512.2 + 220124 0.74 0.252192
Target:  5'- -cCGCCAcGCGggGCGGCGGGuCCGGCu- -3'
miRNA:   3'- uuGCGGU-CGUa-CGCCGCCC-GGUCGcu -5'
8952 5' -62.8 NC_002512.2 + 219473 0.67 0.594543
Target:  5'- cGACGCgGuCGUGCcccuggGGCGGGUCAGaCGAg -3'
miRNA:   3'- -UUGCGgUcGUACG------CCGCCCGGUC-GCU- -5'
8952 5' -62.8 NC_002512.2 + 218215 0.7 0.421366
Target:  5'- -cCGCCucgGGCc-GCGGCGGGCC-GCGGc -3'
miRNA:   3'- uuGCGG---UCGuaCGCCGCCCGGuCGCU- -5'
8952 5' -62.8 NC_002512.2 + 217780 0.71 0.39679
Target:  5'- -uCGCCGGgGUcGCGGCcGGCUGGCGGa -3'
miRNA:   3'- uuGCGGUCgUA-CGCCGcCCGGUCGCU- -5'
8952 5' -62.8 NC_002512.2 + 217129 0.67 0.604203
Target:  5'- uGCGgCGGCA-GCaGCGGGcCCAGCu- -3'
miRNA:   3'- uUGCgGUCGUaCGcCGCCC-GGUCGcu -5'
8952 5' -62.8 NC_002512.2 + 216562 0.95 0.009398
Target:  5'- gAACG-CAGCAUGCGGCGGGCCAGCGAg -3'
miRNA:   3'- -UUGCgGUCGUACGCCGCCCGGUCGCU- -5'
8952 5' -62.8 NC_002512.2 + 212148 0.71 0.380926
Target:  5'- uGCGUCGGCGggcacugGCGGCGGGaCGGCu- -3'
miRNA:   3'- uUGCGGUCGUa------CGCCGCCCgGUCGcu -5'
8952 5' -62.8 NC_002512.2 + 211291 0.73 0.301508
Target:  5'- uGCGCCgagugcGGCAUGCGGCGGuCCgAGCGc -3'
miRNA:   3'- uUGCGG------UCGUACGCCGCCcGG-UCGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.