miRNA display CGI


Results 1 - 20 of 192 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8952 5' -62.8 NC_002512.2 + 191483 0.66 0.691183
Target:  5'- aGGCGCCGGaCAgcGCGGCGa-CCGGCGc -3'
miRNA:   3'- -UUGCGGUC-GUa-CGCCGCccGGUCGCu -5'
8952 5' -62.8 NC_002512.2 + 178415 0.67 0.613881
Target:  5'- uACGCCAggucuucguGCAguugGCGGauCGGGUCGGCGc -3'
miRNA:   3'- uUGCGGU---------CGUa---CGCC--GCCCGGUCGCu -5'
8952 5' -62.8 NC_002512.2 + 94031 0.67 0.604203
Target:  5'- -cCGCCAGCuccuCGGCGGuGaCGGCGAc -3'
miRNA:   3'- uuGCGGUCGuac-GCCGCC-CgGUCGCU- -5'
8952 5' -62.8 NC_002512.2 + 216562 0.95 0.009398
Target:  5'- gAACG-CAGCAUGCGGCGGGCCAGCGAg -3'
miRNA:   3'- -UUGCgGUCGUACGCCGCCCGGUCGCU- -5'
8952 5' -62.8 NC_002512.2 + 129537 0.66 0.671975
Target:  5'- cGACGCC---GUGCuGCGuGGCCGGCGc -3'
miRNA:   3'- -UUGCGGucgUACGcCGC-CCGGUCGCu -5'
8952 5' -62.8 NC_002512.2 + 190072 0.66 0.671975
Target:  5'- --aGCUGGCc-GCGGCcGGUCAGCGGg -3'
miRNA:   3'- uugCGGUCGuaCGCCGcCCGGUCGCU- -5'
8952 5' -62.8 NC_002512.2 + 189890 0.66 0.652651
Target:  5'- aGACGgCGGCGgcgaggacgGCGGCGaGGaCGGCGGc -3'
miRNA:   3'- -UUGCgGUCGUa--------CGCCGC-CCgGUCGCU- -5'
8952 5' -62.8 NC_002512.2 + 152947 0.66 0.652651
Target:  5'- --gGUCAGCGggaGCGGUccccggucGGGUCGGCGGg -3'
miRNA:   3'- uugCGGUCGUa--CGCCG--------CCCGGUCGCU- -5'
8952 5' -62.8 NC_002512.2 + 101430 0.66 0.642963
Target:  5'- cAGCGgCGGCcgGCGGCGcGGCgacgccgagAGCGGg -3'
miRNA:   3'- -UUGCgGUCGuaCGCCGC-CCGg--------UCGCU- -5'
8952 5' -62.8 NC_002512.2 + 161906 0.67 0.623571
Target:  5'- cGCGCCGGCccuccucCGGCGGacGCCacGGCGAa -3'
miRNA:   3'- uUGCGGUCGuac----GCCGCC--CGG--UCGCU- -5'
8952 5' -62.8 NC_002512.2 + 103673 0.67 0.633267
Target:  5'- gAGCGCCucgacgucGCAgaggGCGGCGGaCgCGGCGGg -3'
miRNA:   3'- -UUGCGGu-------CGUa---CGCCGCCcG-GUCGCU- -5'
8952 5' -62.8 NC_002512.2 + 113724 0.66 0.642963
Target:  5'- cGACGCgGGCG-GCGaucuGCGGGCCGaggugcGCGGu -3'
miRNA:   3'- -UUGCGgUCGUaCGC----CGCCCGGU------CGCU- -5'
8952 5' -62.8 NC_002512.2 + 114185 0.66 0.681597
Target:  5'- uGGCGCCGGCGU----CGGGCcCGGCGGc -3'
miRNA:   3'- -UUGCGGUCGUAcgccGCCCG-GUCGCU- -5'
8952 5' -62.8 NC_002512.2 + 170183 0.67 0.633267
Target:  5'- uGCGCCAGCGUGauGUucucGGCCAugaGCGGg -3'
miRNA:   3'- uUGCGGUCGUACgcCGc---CCGGU---CGCU- -5'
8952 5' -62.8 NC_002512.2 + 227470 0.66 0.671975
Target:  5'- aGAgGCCGGgG-GCGGCcGGCC-GCGAg -3'
miRNA:   3'- -UUgCGGUCgUaCGCCGcCCGGuCGCU- -5'
8952 5' -62.8 NC_002512.2 + 224805 0.66 0.643932
Target:  5'- cGACGCCGGCGacgacgaccaacgccGCgGGCGGGCUGGaCGc -3'
miRNA:   3'- -UUGCGGUCGUa--------------CG-CCGCCCGGUC-GCu -5'
8952 5' -62.8 NC_002512.2 + 113667 0.67 0.623571
Target:  5'- -cCGCgAGgGUGCGcGCGGGUCGGaCGu -3'
miRNA:   3'- uuGCGgUCgUACGC-CGCCCGGUC-GCu -5'
8952 5' -62.8 NC_002512.2 + 222532 0.67 0.612912
Target:  5'- --gGCCGcCGUcGCGGUGGGCCgggcuacGGCGAc -3'
miRNA:   3'- uugCGGUcGUA-CGCCGCCCGG-------UCGCU- -5'
8952 5' -62.8 NC_002512.2 + 132572 0.66 0.671975
Target:  5'- cGACcCCGGCGggcGCGGCcagGGGuUCGGCGAg -3'
miRNA:   3'- -UUGcGGUCGUa--CGCCG---CCC-GGUCGCU- -5'
8952 5' -62.8 NC_002512.2 + 130213 0.66 0.661357
Target:  5'- --gGCCAGUGguccucgGCGGCGGGgaaccucugggccCCGGCGu -3'
miRNA:   3'- uugCGGUCGUa------CGCCGCCC-------------GGUCGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.