Results 1 - 20 of 98 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
8955 | 5' | -55.7 | NC_002512.2 | + | 76493 | 0.66 | 0.96836 |
Target: 5'- -cCGCCGccGCGCUCcacGUCG-CUCCGg -3' miRNA: 3'- acGCGGUa-UGCGAGa--CAGCaGAGGCg -5' |
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8955 | 5' | -55.7 | NC_002512.2 | + | 222445 | 0.66 | 0.96836 |
Target: 5'- aGCGUCgcGUGCGCcguUCUcGUCGUucgacgauggaCUCCGUg -3' miRNA: 3'- aCGCGG--UAUGCG---AGA-CAGCA-----------GAGGCG- -5' |
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8955 | 5' | -55.7 | NC_002512.2 | + | 191649 | 0.66 | 0.96836 |
Target: 5'- cUGuCGCCuuucuguCGCgagGcCGUCUCCGCu -3' miRNA: 3'- -AC-GCGGuau----GCGagaCaGCAGAGGCG- -5' |
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8955 | 5' | -55.7 | NC_002512.2 | + | 124646 | 0.66 | 0.96836 |
Target: 5'- gUGCGCgGcgcgGCGCUCacgcUGUaCGcCUUCGCg -3' miRNA: 3'- -ACGCGgUa---UGCGAG----ACA-GCaGAGGCG- -5' |
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8955 | 5' | -55.7 | NC_002512.2 | + | 113033 | 0.66 | 0.96836 |
Target: 5'- gGCGCCGcACGCguggUUGuUCGUCacggCCGg -3' miRNA: 3'- aCGCGGUaUGCGa---GAC-AGCAGa---GGCg -5' |
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8955 | 5' | -55.7 | NC_002512.2 | + | 181388 | 0.66 | 0.96836 |
Target: 5'- cGuCGUCGUGCGCcCUGgc--CUCCGCc -3' miRNA: 3'- aC-GCGGUAUGCGaGACagcaGAGGCG- -5' |
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8955 | 5' | -55.7 | NC_002512.2 | + | 96085 | 0.66 | 0.96836 |
Target: 5'- cGCaCCcgGCGCgaccGUCGUCcCCGCc -3' miRNA: 3'- aCGcGGuaUGCGaga-CAGCAGaGGCG- -5' |
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8955 | 5' | -55.7 | NC_002512.2 | + | 80045 | 0.66 | 0.968063 |
Target: 5'- cGuCGUCGUccucgucGCGCgg-GUCGcUCUCCGCc -3' miRNA: 3'- aC-GCGGUA-------UGCGagaCAGC-AGAGGCG- -5' |
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8955 | 5' | -55.7 | NC_002512.2 | + | 219290 | 0.66 | 0.965303 |
Target: 5'- cGaCGCCGUGgccCGCU---UCGUCgUCCGCg -3' miRNA: 3'- aC-GCGGUAU---GCGAgacAGCAG-AGGCG- -5' |
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8955 | 5' | -55.7 | NC_002512.2 | + | 226401 | 0.66 | 0.965303 |
Target: 5'- gGCGCCGggacccguCGCgUCcG-CGUCUCCGg -3' miRNA: 3'- aCGCGGUau------GCG-AGaCaGCAGAGGCg -5' |
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8955 | 5' | -55.7 | NC_002512.2 | + | 96997 | 0.66 | 0.964986 |
Target: 5'- cGuCGCCGgggACGC-C-GUCGUCgauuuccUCCGCg -3' miRNA: 3'- aC-GCGGUa--UGCGaGaCAGCAG-------AGGCG- -5' |
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8955 | 5' | -55.7 | NC_002512.2 | + | 172822 | 0.66 | 0.962379 |
Target: 5'- gUGCGCCuacCGUUCgcccggcgccccccgGUCGUCggacgcggccUCCGCu -3' miRNA: 3'- -ACGCGGuauGCGAGa--------------CAGCAG----------AGGCG- -5' |
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8955 | 5' | -55.7 | NC_002512.2 | + | 159020 | 0.66 | 0.962044 |
Target: 5'- cGCGCCGgGCGgaCcGaCGacuUCUCCGCg -3' miRNA: 3'- aCGCGGUaUGCgaGaCaGC---AGAGGCG- -5' |
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8955 | 5' | -55.7 | NC_002512.2 | + | 215350 | 0.66 | 0.962044 |
Target: 5'- cGUGCCcg--GCUCcGUCGaCUCCGUc -3' miRNA: 3'- aCGCGGuaugCGAGaCAGCaGAGGCG- -5' |
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8955 | 5' | -55.7 | NC_002512.2 | + | 126556 | 0.66 | 0.958579 |
Target: 5'- cGaCGCCcccACGCUCgGUCGUCcUgGCg -3' miRNA: 3'- aC-GCGGua-UGCGAGaCAGCAGaGgCG- -5' |
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8955 | 5' | -55.7 | NC_002512.2 | + | 38943 | 0.66 | 0.958579 |
Target: 5'- gGCGCCcgcGUGCGCcCggGUCuggUUCCGCu -3' miRNA: 3'- aCGCGG---UAUGCGaGa-CAGca-GAGGCG- -5' |
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8955 | 5' | -55.7 | NC_002512.2 | + | 192894 | 0.66 | 0.958579 |
Target: 5'- aGCGCCGUcGCGCUCcgcggcgGUCcagagCCGCc -3' miRNA: 3'- aCGCGGUA-UGCGAGa------CAGcaga-GGCG- -5' |
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8955 | 5' | -55.7 | NC_002512.2 | + | 224944 | 0.66 | 0.954903 |
Target: 5'- cGUGCCGguguCGCUCggcuccGcCGUCUacCCGCu -3' miRNA: 3'- aCGCGGUau--GCGAGa-----CaGCAGA--GGCG- -5' |
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8955 | 5' | -55.7 | NC_002512.2 | + | 200122 | 0.66 | 0.951012 |
Target: 5'- aGCGCCAcaucACcaaCUCUGUCGUCUaCGa -3' miRNA: 3'- aCGCGGUa---UGc--GAGACAGCAGAgGCg -5' |
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8955 | 5' | -55.7 | NC_002512.2 | + | 96854 | 0.66 | 0.951012 |
Target: 5'- cUGCGCgAcuCGCUC-GUCGUCUUCu- -3' miRNA: 3'- -ACGCGgUauGCGAGaCAGCAGAGGcg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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