miRNA display CGI


Results 1 - 20 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8955 5' -55.7 NC_002512.2 + 113033 0.66 0.96836
Target:  5'- gGCGCCGcACGCguggUUGuUCGUCacggCCGg -3'
miRNA:   3'- aCGCGGUaUGCGa---GAC-AGCAGa---GGCg -5'
8955 5' -55.7 NC_002512.2 + 191649 0.66 0.96836
Target:  5'- cUGuCGCCuuucuguCGCgagGcCGUCUCCGCu -3'
miRNA:   3'- -AC-GCGGuau----GCGagaCaGCAGAGGCG- -5'
8955 5' -55.7 NC_002512.2 + 124646 0.66 0.96836
Target:  5'- gUGCGCgGcgcgGCGCUCacgcUGUaCGcCUUCGCg -3'
miRNA:   3'- -ACGCGgUa---UGCGAG----ACA-GCaGAGGCG- -5'
8955 5' -55.7 NC_002512.2 + 222445 0.66 0.96836
Target:  5'- aGCGUCgcGUGCGCcguUCUcGUCGUucgacgauggaCUCCGUg -3'
miRNA:   3'- aCGCGG--UAUGCG---AGA-CAGCA-----------GAGGCG- -5'
8955 5' -55.7 NC_002512.2 + 76493 0.66 0.96836
Target:  5'- -cCGCCGccGCGCUCcacGUCG-CUCCGg -3'
miRNA:   3'- acGCGGUa-UGCGAGa--CAGCaGAGGCg -5'
8955 5' -55.7 NC_002512.2 + 181388 0.66 0.96836
Target:  5'- cGuCGUCGUGCGCcCUGgc--CUCCGCc -3'
miRNA:   3'- aC-GCGGUAUGCGaGACagcaGAGGCG- -5'
8955 5' -55.7 NC_002512.2 + 96085 0.66 0.96836
Target:  5'- cGCaCCcgGCGCgaccGUCGUCcCCGCc -3'
miRNA:   3'- aCGcGGuaUGCGaga-CAGCAGaGGCG- -5'
8955 5' -55.7 NC_002512.2 + 80045 0.66 0.968063
Target:  5'- cGuCGUCGUccucgucGCGCgg-GUCGcUCUCCGCc -3'
miRNA:   3'- aC-GCGGUA-------UGCGagaCAGC-AGAGGCG- -5'
8955 5' -55.7 NC_002512.2 + 226401 0.66 0.965303
Target:  5'- gGCGCCGggacccguCGCgUCcG-CGUCUCCGg -3'
miRNA:   3'- aCGCGGUau------GCG-AGaCaGCAGAGGCg -5'
8955 5' -55.7 NC_002512.2 + 219290 0.66 0.965303
Target:  5'- cGaCGCCGUGgccCGCU---UCGUCgUCCGCg -3'
miRNA:   3'- aC-GCGGUAU---GCGAgacAGCAG-AGGCG- -5'
8955 5' -55.7 NC_002512.2 + 96997 0.66 0.964986
Target:  5'- cGuCGCCGgggACGC-C-GUCGUCgauuuccUCCGCg -3'
miRNA:   3'- aC-GCGGUa--UGCGaGaCAGCAG-------AGGCG- -5'
8955 5' -55.7 NC_002512.2 + 172822 0.66 0.962379
Target:  5'- gUGCGCCuacCGUUCgcccggcgccccccgGUCGUCggacgcggccUCCGCu -3'
miRNA:   3'- -ACGCGGuauGCGAGa--------------CAGCAG----------AGGCG- -5'
8955 5' -55.7 NC_002512.2 + 159020 0.66 0.962044
Target:  5'- cGCGCCGgGCGgaCcGaCGacuUCUCCGCg -3'
miRNA:   3'- aCGCGGUaUGCgaGaCaGC---AGAGGCG- -5'
8955 5' -55.7 NC_002512.2 + 215350 0.66 0.962044
Target:  5'- cGUGCCcg--GCUCcGUCGaCUCCGUc -3'
miRNA:   3'- aCGCGGuaugCGAGaCAGCaGAGGCG- -5'
8955 5' -55.7 NC_002512.2 + 38943 0.66 0.958579
Target:  5'- gGCGCCcgcGUGCGCcCggGUCuggUUCCGCu -3'
miRNA:   3'- aCGCGG---UAUGCGaGa-CAGca-GAGGCG- -5'
8955 5' -55.7 NC_002512.2 + 126556 0.66 0.958579
Target:  5'- cGaCGCCcccACGCUCgGUCGUCcUgGCg -3'
miRNA:   3'- aC-GCGGua-UGCGAGaCAGCAGaGgCG- -5'
8955 5' -55.7 NC_002512.2 + 192894 0.66 0.958579
Target:  5'- aGCGCCGUcGCGCUCcgcggcgGUCcagagCCGCc -3'
miRNA:   3'- aCGCGGUA-UGCGAGa------CAGcaga-GGCG- -5'
8955 5' -55.7 NC_002512.2 + 224944 0.66 0.954903
Target:  5'- cGUGCCGguguCGCUCggcuccGcCGUCUacCCGCu -3'
miRNA:   3'- aCGCGGUau--GCGAGa-----CaGCAGA--GGCG- -5'
8955 5' -55.7 NC_002512.2 + 96854 0.66 0.951012
Target:  5'- cUGCGCgAcuCGCUC-GUCGUCUUCu- -3'
miRNA:   3'- -ACGCGgUauGCGAGaCAGCAGAGGcg -5'
8955 5' -55.7 NC_002512.2 + 200122 0.66 0.951012
Target:  5'- aGCGCCAcaucACcaaCUCUGUCGUCUaCGa -3'
miRNA:   3'- aCGCGGUa---UGc--GAGACAGCAGAgGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.