Results 1 - 20 of 83 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
8957 | 3' | -54.9 | NC_002512.2 | + | 149791 | 0.66 | 0.978802 |
Target: 5'- cCACGa-GCUgGACGGGaucGAGAUgGUCg -3' miRNA: 3'- aGUGCgaCGAgCUGCUC---CUCUAgCAG- -5' |
|||||||
8957 | 3' | -54.9 | NC_002512.2 | + | 27974 | 0.66 | 0.978802 |
Target: 5'- aUC-CGCgGUUCGGauuacaucuuCGAGGAGGUCG-Cg -3' miRNA: 3'- -AGuGCGaCGAGCU----------GCUCCUCUAGCaG- -5' |
|||||||
8957 | 3' | -54.9 | NC_002512.2 | + | 139083 | 0.66 | 0.978802 |
Target: 5'- cCGCGUUGaa-GAuCGAGcGGAUCGUCg -3' miRNA: 3'- aGUGCGACgagCU-GCUCcUCUAGCAG- -5' |
|||||||
8957 | 3' | -54.9 | NC_002512.2 | + | 156167 | 0.66 | 0.977438 |
Target: 5'- cUguCGCUGCUCGagcGCGAccagcucauggucauGGAcGUCGUCa -3' miRNA: 3'- -AguGCGACGAGC---UGCU---------------CCUcUAGCAG- -5' |
|||||||
8957 | 3' | -54.9 | NC_002512.2 | + | 75184 | 0.66 | 0.976494 |
Target: 5'- gUCGCGCcGCUCGACGccGGAcGGcCGcUCg -3' miRNA: 3'- -AGUGCGaCGAGCUGCu-CCU-CUaGC-AG- -5' |
|||||||
8957 | 3' | -54.9 | NC_002512.2 | + | 82423 | 0.66 | 0.976494 |
Target: 5'- gUCcCGCgGCggagggGACGAGGGGG-CGUCg -3' miRNA: 3'- -AGuGCGaCGag----CUGCUCCUCUaGCAG- -5' |
|||||||
8957 | 3' | -54.9 | NC_002512.2 | + | 83814 | 0.66 | 0.974006 |
Target: 5'- gCGCGCcgGCggCGGCGgcuccGGGcccGGGUCGUCg -3' miRNA: 3'- aGUGCGa-CGa-GCUGC-----UCC---UCUAGCAG- -5' |
|||||||
8957 | 3' | -54.9 | NC_002512.2 | + | 180367 | 0.66 | 0.974006 |
Target: 5'- gUCGCGCagggcgccgaUGCUCuGCGGGGGGA-CGa- -3' miRNA: 3'- -AGUGCG----------ACGAGcUGCUCCUCUaGCag -5' |
|||||||
8957 | 3' | -54.9 | NC_002512.2 | + | 175900 | 0.66 | 0.974006 |
Target: 5'- cUCACcaGCgGCUgCGACGAGaucAGGUUGUCg -3' miRNA: 3'- -AGUG--CGaCGA-GCUGCUCc--UCUAGCAG- -5' |
|||||||
8957 | 3' | -54.9 | NC_002512.2 | + | 155874 | 0.66 | 0.973487 |
Target: 5'- cCACGCUGUUCGuccccgacggcgggcGCGGGGAcGAguccggcgccgacgCGUCc -3' miRNA: 3'- aGUGCGACGAGC---------------UGCUCCU-CUa-------------GCAG- -5' |
|||||||
8957 | 3' | -54.9 | NC_002512.2 | + | 5089 | 0.66 | 0.971333 |
Target: 5'- gUCGuCGCcgGCgUCGGCGcgggcGGGAGAgacaUCGUCg -3' miRNA: 3'- -AGU-GCGa-CG-AGCUGC-----UCCUCU----AGCAG- -5' |
|||||||
8957 | 3' | -54.9 | NC_002512.2 | + | 134271 | 0.66 | 0.971333 |
Target: 5'- aUC-UGCUGCUCGugGugaGGGAGAaggCGg- -3' miRNA: 3'- -AGuGCGACGAGCugC---UCCUCUa--GCag -5' |
|||||||
8957 | 3' | -54.9 | NC_002512.2 | + | 219258 | 0.66 | 0.971333 |
Target: 5'- cUCugGCUGCUCGucCGgcAGGGGG-CGg- -3' miRNA: 3'- -AGugCGACGAGCu-GC--UCCUCUaGCag -5' |
|||||||
8957 | 3' | -54.9 | NC_002512.2 | + | 89771 | 0.66 | 0.971333 |
Target: 5'- gCGCGCggGCaUCuGAcauCGGGGAGAgcgUCGUCg -3' miRNA: 3'- aGUGCGa-CG-AG-CU---GCUCCUCU---AGCAG- -5' |
|||||||
8957 | 3' | -54.9 | NC_002512.2 | + | 108811 | 0.66 | 0.970494 |
Target: 5'- -gGCGCUGUUCcGCGAGGcgugcgagguguacGGAgCGUCc -3' miRNA: 3'- agUGCGACGAGcUGCUCC--------------UCUaGCAG- -5' |
|||||||
8957 | 3' | -54.9 | NC_002512.2 | + | 106690 | 0.66 | 0.968468 |
Target: 5'- gUCGCGgUGUUCGGCGAuGGGGcUC-UCc -3' miRNA: 3'- -AGUGCgACGAGCUGCU-CCUCuAGcAG- -5' |
|||||||
8957 | 3' | -54.9 | NC_002512.2 | + | 219017 | 0.66 | 0.968468 |
Target: 5'- gCACuGCUGCUgCGACGugcuGGucuacGUCGUCg -3' miRNA: 3'- aGUG-CGACGA-GCUGCu---CCuc---UAGCAG- -5' |
|||||||
8957 | 3' | -54.9 | NC_002512.2 | + | 90312 | 0.67 | 0.965405 |
Target: 5'- gCGCGgaGCUgagCGccuGCGAGGAGAUCa-- -3' miRNA: 3'- aGUGCgaCGA---GC---UGCUCCUCUAGcag -5' |
|||||||
8957 | 3' | -54.9 | NC_002512.2 | + | 49807 | 0.67 | 0.962139 |
Target: 5'- aUCGCGgacgagaaaCUGCggaGAC-AGGGGGUCGUCc -3' miRNA: 3'- -AGUGC---------GACGag-CUGcUCCUCUAGCAG- -5' |
|||||||
8957 | 3' | -54.9 | NC_002512.2 | + | 3988 | 0.67 | 0.962139 |
Target: 5'- aCGCGCUcCUCGggagGCGGGGGG--CGUCg -3' miRNA: 3'- aGUGCGAcGAGC----UGCUCCUCuaGCAG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home