miRNA display CGI


Results 1 - 20 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8957 3' -54.9 NC_002512.2 + 149791 0.66 0.978802
Target:  5'- cCACGa-GCUgGACGGGaucGAGAUgGUCg -3'
miRNA:   3'- aGUGCgaCGAgCUGCUC---CUCUAgCAG- -5'
8957 3' -54.9 NC_002512.2 + 27974 0.66 0.978802
Target:  5'- aUC-CGCgGUUCGGauuacaucuuCGAGGAGGUCG-Cg -3'
miRNA:   3'- -AGuGCGaCGAGCU----------GCUCCUCUAGCaG- -5'
8957 3' -54.9 NC_002512.2 + 139083 0.66 0.978802
Target:  5'- cCGCGUUGaa-GAuCGAGcGGAUCGUCg -3'
miRNA:   3'- aGUGCGACgagCU-GCUCcUCUAGCAG- -5'
8957 3' -54.9 NC_002512.2 + 156167 0.66 0.977438
Target:  5'- cUguCGCUGCUCGagcGCGAccagcucauggucauGGAcGUCGUCa -3'
miRNA:   3'- -AguGCGACGAGC---UGCU---------------CCUcUAGCAG- -5'
8957 3' -54.9 NC_002512.2 + 75184 0.66 0.976494
Target:  5'- gUCGCGCcGCUCGACGccGGAcGGcCGcUCg -3'
miRNA:   3'- -AGUGCGaCGAGCUGCu-CCU-CUaGC-AG- -5'
8957 3' -54.9 NC_002512.2 + 82423 0.66 0.976494
Target:  5'- gUCcCGCgGCggagggGACGAGGGGG-CGUCg -3'
miRNA:   3'- -AGuGCGaCGag----CUGCUCCUCUaGCAG- -5'
8957 3' -54.9 NC_002512.2 + 83814 0.66 0.974006
Target:  5'- gCGCGCcgGCggCGGCGgcuccGGGcccGGGUCGUCg -3'
miRNA:   3'- aGUGCGa-CGa-GCUGC-----UCC---UCUAGCAG- -5'
8957 3' -54.9 NC_002512.2 + 180367 0.66 0.974006
Target:  5'- gUCGCGCagggcgccgaUGCUCuGCGGGGGGA-CGa- -3'
miRNA:   3'- -AGUGCG----------ACGAGcUGCUCCUCUaGCag -5'
8957 3' -54.9 NC_002512.2 + 175900 0.66 0.974006
Target:  5'- cUCACcaGCgGCUgCGACGAGaucAGGUUGUCg -3'
miRNA:   3'- -AGUG--CGaCGA-GCUGCUCc--UCUAGCAG- -5'
8957 3' -54.9 NC_002512.2 + 155874 0.66 0.973487
Target:  5'- cCACGCUGUUCGuccccgacggcgggcGCGGGGAcGAguccggcgccgacgCGUCc -3'
miRNA:   3'- aGUGCGACGAGC---------------UGCUCCU-CUa-------------GCAG- -5'
8957 3' -54.9 NC_002512.2 + 5089 0.66 0.971333
Target:  5'- gUCGuCGCcgGCgUCGGCGcgggcGGGAGAgacaUCGUCg -3'
miRNA:   3'- -AGU-GCGa-CG-AGCUGC-----UCCUCU----AGCAG- -5'
8957 3' -54.9 NC_002512.2 + 134271 0.66 0.971333
Target:  5'- aUC-UGCUGCUCGugGugaGGGAGAaggCGg- -3'
miRNA:   3'- -AGuGCGACGAGCugC---UCCUCUa--GCag -5'
8957 3' -54.9 NC_002512.2 + 219258 0.66 0.971333
Target:  5'- cUCugGCUGCUCGucCGgcAGGGGG-CGg- -3'
miRNA:   3'- -AGugCGACGAGCu-GC--UCCUCUaGCag -5'
8957 3' -54.9 NC_002512.2 + 89771 0.66 0.971333
Target:  5'- gCGCGCggGCaUCuGAcauCGGGGAGAgcgUCGUCg -3'
miRNA:   3'- aGUGCGa-CG-AG-CU---GCUCCUCU---AGCAG- -5'
8957 3' -54.9 NC_002512.2 + 108811 0.66 0.970494
Target:  5'- -gGCGCUGUUCcGCGAGGcgugcgagguguacGGAgCGUCc -3'
miRNA:   3'- agUGCGACGAGcUGCUCC--------------UCUaGCAG- -5'
8957 3' -54.9 NC_002512.2 + 106690 0.66 0.968468
Target:  5'- gUCGCGgUGUUCGGCGAuGGGGcUC-UCc -3'
miRNA:   3'- -AGUGCgACGAGCUGCU-CCUCuAGcAG- -5'
8957 3' -54.9 NC_002512.2 + 219017 0.66 0.968468
Target:  5'- gCACuGCUGCUgCGACGugcuGGucuacGUCGUCg -3'
miRNA:   3'- aGUG-CGACGA-GCUGCu---CCuc---UAGCAG- -5'
8957 3' -54.9 NC_002512.2 + 90312 0.67 0.965405
Target:  5'- gCGCGgaGCUgagCGccuGCGAGGAGAUCa-- -3'
miRNA:   3'- aGUGCgaCGA---GC---UGCUCCUCUAGcag -5'
8957 3' -54.9 NC_002512.2 + 49807 0.67 0.962139
Target:  5'- aUCGCGgacgagaaaCUGCggaGAC-AGGGGGUCGUCc -3'
miRNA:   3'- -AGUGC---------GACGag-CUGcUCCUCUAGCAG- -5'
8957 3' -54.9 NC_002512.2 + 3988 0.67 0.962139
Target:  5'- aCGCGCUcCUCGggagGCGGGGGG--CGUCg -3'
miRNA:   3'- aGUGCGAcGAGC----UGCUCCUCuaGCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.