Results 1 - 20 of 118 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
8957 | 5' | -56.4 | NC_002512.2 | + | 72836 | 0.66 | 0.962833 |
Target: 5'- cGGGACGcccgccuuGCcgGguccUCGCUccgGGCCGCGUc -3' miRNA: 3'- -CCCUGC--------UGuaCa---AGCGG---CCGGUGCAc -5' |
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8957 | 5' | -56.4 | NC_002512.2 | + | 8850 | 0.66 | 0.962833 |
Target: 5'- cGGAacaGugGUGUgcacCGUCGGUCACGa- -3' miRNA: 3'- cCCUg--CugUACAa---GCGGCCGGUGCac -5' |
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8957 | 5' | -56.4 | NC_002512.2 | + | 161271 | 0.66 | 0.962505 |
Target: 5'- cGGGCuuugccuGACGUGggcgagUCGCUGGCCuACGa- -3' miRNA: 3'- cCCUG-------CUGUACa-----AGCGGCCGG-UGCac -5' |
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8957 | 5' | -56.4 | NC_002512.2 | + | 110499 | 0.66 | 0.959466 |
Target: 5'- -cGGCGuCAUGUUCGgguugCGGCCGCGc- -3' miRNA: 3'- ccCUGCuGUACAAGCg----GCCGGUGCac -5' |
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8957 | 5' | -56.4 | NC_002512.2 | + | 206299 | 0.66 | 0.959466 |
Target: 5'- uGGAUcuCGUGUUCGCucucgcccagCGGCCACGc- -3' miRNA: 3'- cCCUGcuGUACAAGCG----------GCCGGUGCac -5' |
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8957 | 5' | -56.4 | NC_002512.2 | + | 110394 | 0.66 | 0.955895 |
Target: 5'- uGGcCGuguACAUGUgcUCGCCGGaCCGCGc- -3' miRNA: 3'- cCCuGC---UGUACA--AGCGGCC-GGUGCac -5' |
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8957 | 5' | -56.4 | NC_002512.2 | + | 213079 | 0.66 | 0.955895 |
Target: 5'- cGGGCuACGUGcucUUCGUCGGCgGCGa- -3' miRNA: 3'- cCCUGcUGUAC---AAGCGGCCGgUGCac -5' |
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8957 | 5' | -56.4 | NC_002512.2 | + | 104947 | 0.66 | 0.955895 |
Target: 5'- cGGcGuCGGCGcgg-CGCCGGCCuCGUGu -3' miRNA: 3'- -CC-CuGCUGUacaaGCGGCCGGuGCAC- -5' |
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8957 | 5' | -56.4 | NC_002512.2 | + | 158718 | 0.66 | 0.955156 |
Target: 5'- uGGACGACGUGUccuucuUCGUCGacgaccaggaaCACGUGg -3' miRNA: 3'- cCCUGCUGUACA------AGCGGCcg---------GUGCAC- -5' |
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8957 | 5' | -56.4 | NC_002512.2 | + | 22363 | 0.66 | 0.955156 |
Target: 5'- cGGGAgGACGcGgccccguccucgUCGUCGGUCGCGg- -3' miRNA: 3'- -CCCUgCUGUaCa-----------AGCGGCCGGUGCac -5' |
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8957 | 5' | -56.4 | NC_002512.2 | + | 34831 | 0.66 | 0.954409 |
Target: 5'- cGGACGACccucccgccCGCgGGCCGCGg- -3' miRNA: 3'- cCCUGCUGuacaa----GCGgCCGGUGCac -5' |
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8957 | 5' | -56.4 | NC_002512.2 | + | 206136 | 0.66 | 0.952116 |
Target: 5'- cGGGGCGuCcgG-UCGCCagacggucauGGCCGUGUGg -3' miRNA: 3'- -CCCUGCuGuaCaAGCGG----------CCGGUGCAC- -5' |
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8957 | 5' | -56.4 | NC_002512.2 | + | 149232 | 0.66 | 0.952116 |
Target: 5'- cGGGAcCGACGgacccggCGCCGccGCCGCGg- -3' miRNA: 3'- -CCCU-GCUGUacaa---GCGGC--CGGUGCac -5' |
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8957 | 5' | -56.4 | NC_002512.2 | + | 97146 | 0.66 | 0.952116 |
Target: 5'- cGGGACGACGccg-CGCUGcGCCuGCGg- -3' miRNA: 3'- -CCCUGCUGUacaaGCGGC-CGG-UGCac -5' |
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8957 | 5' | -56.4 | NC_002512.2 | + | 50446 | 0.66 | 0.952116 |
Target: 5'- cGGAUGucCAgaagaCGCCGGCCGCGa- -3' miRNA: 3'- cCCUGCu-GUacaa-GCGGCCGGUGCac -5' |
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8957 | 5' | -56.4 | NC_002512.2 | + | 7750 | 0.66 | 0.952116 |
Target: 5'- gGGGGCGgaGCcgGggcgguaGUCGGCCGCGg- -3' miRNA: 3'- -CCCUGC--UGuaCaag----CGGCCGGUGCac -5' |
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8957 | 5' | -56.4 | NC_002512.2 | + | 49604 | 0.66 | 0.952116 |
Target: 5'- aGGGCGACggGaaCGCCGccGCCAUGa- -3' miRNA: 3'- cCCUGCUGuaCaaGCGGC--CGGUGCac -5' |
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8957 | 5' | -56.4 | NC_002512.2 | + | 29951 | 0.66 | 0.952116 |
Target: 5'- uGGACaGCcgGUgagcggCgGCCGGCCGCGa- -3' miRNA: 3'- cCCUGcUGuaCAa-----G-CGGCCGGUGCac -5' |
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8957 | 5' | -56.4 | NC_002512.2 | + | 55862 | 0.66 | 0.952116 |
Target: 5'- aGGACuucgaggcgGACAUGUaCGCgGGCUGCGa- -3' miRNA: 3'- cCCUG---------CUGUACAaGCGgCCGGUGCac -5' |
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8957 | 5' | -56.4 | NC_002512.2 | + | 57860 | 0.66 | 0.948126 |
Target: 5'- uGGGGCG-CAUGc-UGCCGGCCGg--- -3' miRNA: 3'- -CCCUGCuGUACaaGCGGCCGGUgcac -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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