miRNA display CGI


Results 1 - 20 of 118 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8957 5' -56.4 NC_002512.2 + 72836 0.66 0.962833
Target:  5'- cGGGACGcccgccuuGCcgGguccUCGCUccgGGCCGCGUc -3'
miRNA:   3'- -CCCUGC--------UGuaCa---AGCGG---CCGGUGCAc -5'
8957 5' -56.4 NC_002512.2 + 8850 0.66 0.962833
Target:  5'- cGGAacaGugGUGUgcacCGUCGGUCACGa- -3'
miRNA:   3'- cCCUg--CugUACAa---GCGGCCGGUGCac -5'
8957 5' -56.4 NC_002512.2 + 161271 0.66 0.962505
Target:  5'- cGGGCuuugccuGACGUGggcgagUCGCUGGCCuACGa- -3'
miRNA:   3'- cCCUG-------CUGUACa-----AGCGGCCGG-UGCac -5'
8957 5' -56.4 NC_002512.2 + 110499 0.66 0.959466
Target:  5'- -cGGCGuCAUGUUCGgguugCGGCCGCGc- -3'
miRNA:   3'- ccCUGCuGUACAAGCg----GCCGGUGCac -5'
8957 5' -56.4 NC_002512.2 + 206299 0.66 0.959466
Target:  5'- uGGAUcuCGUGUUCGCucucgcccagCGGCCACGc- -3'
miRNA:   3'- cCCUGcuGUACAAGCG----------GCCGGUGCac -5'
8957 5' -56.4 NC_002512.2 + 110394 0.66 0.955895
Target:  5'- uGGcCGuguACAUGUgcUCGCCGGaCCGCGc- -3'
miRNA:   3'- cCCuGC---UGUACA--AGCGGCC-GGUGCac -5'
8957 5' -56.4 NC_002512.2 + 213079 0.66 0.955895
Target:  5'- cGGGCuACGUGcucUUCGUCGGCgGCGa- -3'
miRNA:   3'- cCCUGcUGUAC---AAGCGGCCGgUGCac -5'
8957 5' -56.4 NC_002512.2 + 104947 0.66 0.955895
Target:  5'- cGGcGuCGGCGcgg-CGCCGGCCuCGUGu -3'
miRNA:   3'- -CC-CuGCUGUacaaGCGGCCGGuGCAC- -5'
8957 5' -56.4 NC_002512.2 + 158718 0.66 0.955156
Target:  5'- uGGACGACGUGUccuucuUCGUCGacgaccaggaaCACGUGg -3'
miRNA:   3'- cCCUGCUGUACA------AGCGGCcg---------GUGCAC- -5'
8957 5' -56.4 NC_002512.2 + 22363 0.66 0.955156
Target:  5'- cGGGAgGACGcGgccccguccucgUCGUCGGUCGCGg- -3'
miRNA:   3'- -CCCUgCUGUaCa-----------AGCGGCCGGUGCac -5'
8957 5' -56.4 NC_002512.2 + 34831 0.66 0.954409
Target:  5'- cGGACGACccucccgccCGCgGGCCGCGg- -3'
miRNA:   3'- cCCUGCUGuacaa----GCGgCCGGUGCac -5'
8957 5' -56.4 NC_002512.2 + 206136 0.66 0.952116
Target:  5'- cGGGGCGuCcgG-UCGCCagacggucauGGCCGUGUGg -3'
miRNA:   3'- -CCCUGCuGuaCaAGCGG----------CCGGUGCAC- -5'
8957 5' -56.4 NC_002512.2 + 149232 0.66 0.952116
Target:  5'- cGGGAcCGACGgacccggCGCCGccGCCGCGg- -3'
miRNA:   3'- -CCCU-GCUGUacaa---GCGGC--CGGUGCac -5'
8957 5' -56.4 NC_002512.2 + 97146 0.66 0.952116
Target:  5'- cGGGACGACGccg-CGCUGcGCCuGCGg- -3'
miRNA:   3'- -CCCUGCUGUacaaGCGGC-CGG-UGCac -5'
8957 5' -56.4 NC_002512.2 + 50446 0.66 0.952116
Target:  5'- cGGAUGucCAgaagaCGCCGGCCGCGa- -3'
miRNA:   3'- cCCUGCu-GUacaa-GCGGCCGGUGCac -5'
8957 5' -56.4 NC_002512.2 + 7750 0.66 0.952116
Target:  5'- gGGGGCGgaGCcgGggcgguaGUCGGCCGCGg- -3'
miRNA:   3'- -CCCUGC--UGuaCaag----CGGCCGGUGCac -5'
8957 5' -56.4 NC_002512.2 + 49604 0.66 0.952116
Target:  5'- aGGGCGACggGaaCGCCGccGCCAUGa- -3'
miRNA:   3'- cCCUGCUGuaCaaGCGGC--CGGUGCac -5'
8957 5' -56.4 NC_002512.2 + 29951 0.66 0.952116
Target:  5'- uGGACaGCcgGUgagcggCgGCCGGCCGCGa- -3'
miRNA:   3'- cCCUGcUGuaCAa-----G-CGGCCGGUGCac -5'
8957 5' -56.4 NC_002512.2 + 55862 0.66 0.952116
Target:  5'- aGGACuucgaggcgGACAUGUaCGCgGGCUGCGa- -3'
miRNA:   3'- cCCUG---------CUGUACAaGCGgCCGGUGCac -5'
8957 5' -56.4 NC_002512.2 + 57860 0.66 0.948126
Target:  5'- uGGGGCG-CAUGc-UGCCGGCCGg--- -3'
miRNA:   3'- -CCCUGCuGUACaaGCGGCCGGUgcac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.