miRNA display CGI


Results 1 - 20 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8958 3' -64.8 NC_002512.2 + 95678 0.66 0.645471
Target:  5'- gAGCGCG-CGuCCGCCggGCcuccggCGGGGa- -3'
miRNA:   3'- -UCGCGCaGC-GGCGGgaCGa-----GCCCCac -5'
8958 3' -64.8 NC_002512.2 + 168036 0.66 0.636056
Target:  5'- gAGUGCGgCGCCuaUCUcGCUCGGGaGUc -3'
miRNA:   3'- -UCGCGCaGCGGcgGGA-CGAGCCC-CAc -5'
8958 3' -64.8 NC_002512.2 + 128775 0.66 0.636056
Target:  5'- gAGCGCacgccgCGCCGCgCgcugGC-CGGGGUc -3'
miRNA:   3'- -UCGCGca----GCGGCGgGa---CGaGCCCCAc -5'
8958 3' -64.8 NC_002512.2 + 80809 0.66 0.626639
Target:  5'- gAGCGCG-CGCgCGCCUcgGCgUCGGcGGa- -3'
miRNA:   3'- -UCGCGCaGCG-GCGGGa-CG-AGCC-CCac -5'
8958 3' -64.8 NC_002512.2 + 63444 0.66 0.626639
Target:  5'- cGGCGcCGUCGCC-CCCggagGacggCGGGGa- -3'
miRNA:   3'- -UCGC-GCAGCGGcGGGa---Cga--GCCCCac -5'
8958 3' -64.8 NC_002512.2 + 176406 0.66 0.626639
Target:  5'- cGcCGCGUCGUgGCaCCUGUccagCaGGGUGg -3'
miRNA:   3'- uC-GCGCAGCGgCG-GGACGa---GcCCCAC- -5'
8958 3' -64.8 NC_002512.2 + 220162 0.66 0.617225
Target:  5'- aAGgGCGUCG-UGCUCUGCgUCGGGa-- -3'
miRNA:   3'- -UCgCGCAGCgGCGGGACG-AGCCCcac -5'
8958 3' -64.8 NC_002512.2 + 159896 0.66 0.617225
Target:  5'- aGGUGUGUCGaCGgcucuuguCCCUGCUgGGGGc- -3'
miRNA:   3'- -UCGCGCAGCgGC--------GGGACGAgCCCCac -5'
8958 3' -64.8 NC_002512.2 + 128369 0.66 0.617225
Target:  5'- cGCGCGgUGCC-CCCUGUgcuacgaCGGGGa- -3'
miRNA:   3'- uCGCGCaGCGGcGGGACGa------GCCCCac -5'
8958 3' -64.8 NC_002512.2 + 15302 0.66 0.611581
Target:  5'- uAGCGUucuccucauaaucggGaUCGUCGCCCUGgUCGcGGUGa -3'
miRNA:   3'- -UCGCG---------------C-AGCGGCGGGACgAGCcCCAC- -5'
8958 3' -64.8 NC_002512.2 + 224695 0.66 0.607821
Target:  5'- cGCG-GUCcugcCCGCCCUGCU-GGGGc- -3'
miRNA:   3'- uCGCgCAGc---GGCGGGACGAgCCCCac -5'
8958 3' -64.8 NC_002512.2 + 146834 0.66 0.607821
Target:  5'- cGCGCGagGUCGCCUgGCcCaGGGUGc -3'
miRNA:   3'- uCGCGCagCGGCGGGaCGaGcCCCAC- -5'
8958 3' -64.8 NC_002512.2 + 81828 0.66 0.607821
Target:  5'- cGGCGCGUCcgaucuGCCGgaCCgGgUCGGGGa- -3'
miRNA:   3'- -UCGCGCAG------CGGCg-GGaCgAGCCCCac -5'
8958 3' -64.8 NC_002512.2 + 134149 0.66 0.607821
Target:  5'- cGCGCGUC-CCGgCCgGCggggaCGGGGa- -3'
miRNA:   3'- uCGCGCAGcGGCgGGaCGa----GCCCCac -5'
8958 3' -64.8 NC_002512.2 + 81793 0.66 0.607821
Target:  5'- cGGCGC--CGCCGCCgCcGC-CGGGGg- -3'
miRNA:   3'- -UCGCGcaGCGGCGG-GaCGaGCCCCac -5'
8958 3' -64.8 NC_002512.2 + 95006 0.66 0.607821
Target:  5'- aGGaCGCGUCGCguCGUCCgggGCagGGGGg- -3'
miRNA:   3'- -UC-GCGCAGCG--GCGGGa--CGagCCCCac -5'
8958 3' -64.8 NC_002512.2 + 102350 0.66 0.607821
Target:  5'- aAGCGCGUCcUCGgCCUGCagucUCGGGa-- -3'
miRNA:   3'- -UCGCGCAGcGGCgGGACG----AGCCCcac -5'
8958 3' -64.8 NC_002512.2 + 111168 0.66 0.598432
Target:  5'- cAGCaCGUCGCCGgCgaGCggcaggCGGGGg- -3'
miRNA:   3'- -UCGcGCAGCGGCgGgaCGa-----GCCCCac -5'
8958 3' -64.8 NC_002512.2 + 79472 0.66 0.589064
Target:  5'- cGGgGCGacCGCgCGCCCgugggcgGUUCGGGGa- -3'
miRNA:   3'- -UCgCGCa-GCG-GCGGGa------CGAGCCCCac -5'
8958 3' -64.8 NC_002512.2 + 105699 0.66 0.589064
Target:  5'- uGUGCGU-GCCGaacgCCgcGCUCGGGGUc -3'
miRNA:   3'- uCGCGCAgCGGCg---GGa-CGAGCCCCAc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.